Factsheet for VIT_04s0044g01750.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g00110.t01	Wine grape	cytosol	24.0	84.91
PGSC0003DMT400048037	Potato	cytosol	72.27	82.62
Solyc03g032000.2.1	Tomato	cytosol, extracellular	71.73	82.01
EES07372	Sorghum	cytosol, mitochondrion	68.27	77.34
PGSC0003DMT400035477	Potato	mitochondrion	75.47	77.11
Os02t0713400-01	Rice	extracellular, plasma membrane	67.73	76.74
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	67.73	76.51
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	67.73	76.51
Solyc02g082250.2.1	Tomato	mitochondrion	74.67	76.29
TraesCS6B01G306300.1	Wheat	cytosol	67.2	75.9
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	66.93	75.83
KRH76499	Soybean	nucleus	74.13	75.14
KRH28954	Soybean	nucleus	73.87	74.46
Zm00001d017823_P001	Maize	cytosol	68.53	73.01
EER89710	Sorghum	mitochondrion	71.47	72.24
TraesCS7B01G194200.1	Wheat	golgi	70.4	71.54
EES09948	Sorghum	mitochondrion	64.53	71.39
Zm00001d037429_P001	Maize	mitochondrion	70.4	71.35
TraesCS7D01G229100.1	Wheat	mitochondrion	69.6	70.73
TraesCS7A01G225400.2	Wheat	mitochondrion	69.87	70.62
GSMUA_Achr9P27590_001	Banana	mitochondrion	66.4	70.34
Zm00001d053118_P001	Maize	cytosol	64.53	69.34
KRH07823	Soybean	mitochondrion	71.73	68.27
HORVU7Hr1G046890.1	Barley	plastid	70.13	67.78
Os04t0524136-00	Rice	plastid	17.07	32.16
VIT_08s0007g08760.t01	Wine grape	plastid	44.53	31.57

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:100263578	wikigene:100263578	Gene3D:3.50.50.60	ProteinID:AGG09346
ProteinID:AGG09346.1	ProteinID:CCB60387	ProteinID:CCB60387.1	UniProt:F6I0C1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
EMBL:FN596506	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0055114	InterPro:IPR036188	EMBL:KC195960	EntrezGene:LOC100263578
wikigene:LOC100263578	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PANTHER:PTHR42863
PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	TIGR:TC71147	TIGRFAMs:TIGR01292
InterPro:Thioredox_Rdtase	UniParc:UPI000210A57E	ArrayExpress:VIT_04s0044g01750	EnsemblPlantsGene:VIT_04s0044g01750	EnsemblPlants:VIT_04s0044g01750.t01	unigene:Vvi.15798
RefSeq:XP_002263864	RefSeq:XP_002263864.1	RefSeq:XP_002263864.2	SEG:seg	:	:

Description

Thioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:F6I0C1]

Coordinates

chr4:-:23601079..23604303

Molecular Weight (calculated)

39676.4 Da

IEP (calculated)

8.048

GRAVY (calculated)

-0.066

Length

375 amino acids

Sequence
(BLAST)

001: MMKCCPDFLR KARKLVGFIA TTSAAAASLS SATSPKLSAA SAMDDLKTLN TRLCIIGSGP AAHTAAIYAS RAQLRPILFE GWMANDIAPG GQLTTTSDVE
101: NFPGFPDGIN GNEIMDRCRA QSLRFGTEIF TETVTRVDFS STPFKVFTDS KTVLADAVIV ATGAVAKRLP FPGSGDGPGG FWNRGISACA VCDGAAPIFR
201: DKPLAVIGGG DSAMEEATFL TKYGSKVYII HRRDAFRASK IMQQRALSNP KIEAIWNSVV VEGHGDEKGR LLGGVKVKNV VSGEVSDLKV SGLFFAIGHE
301: PATKFLDGQL KLDSDGYVVT EPGTTKTSVR GVFAAGDVQD KKYRQAVTAA GTGCMAALDA EHYLQEIGSQ EGKSD

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.