Factsheet for VIT_05s0049g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01750.t01	Wine grape	mitochondrion	84.91	24.0
PGSC0003DMT400048037	Potato	cytosol	67.92	21.95
Solyc03g032000.2.1	Tomato	cytosol, extracellular	66.98	21.65
Os04t0524136-00	Rice	plastid	40.57	21.61
EES07372	Sorghum	cytosol, mitochondrion	65.09	20.85
Os02t0713400-01	Rice	extracellular, plasma membrane	64.15	20.54
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	62.26	19.88
TraesCS6B01G306300.1	Wheat	cytosol	62.26	19.88
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	62.26	19.88
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	61.32	19.64
Zm00001d017823_P001	Maize	cytosol	65.09	19.6
PGSC0003DMT400035477	Potato	mitochondrion	66.98	19.35
Solyc02g082250.2.1	Tomato	mitochondrion	66.98	19.35
EES09948	Sorghum	mitochondrion	58.49	18.29
Zm00001d053118_P001	Maize	cytosol	59.43	18.05
TraesCS7B01G194200.1	Wheat	golgi	61.32	17.62
Zm00001d037429_P001	Maize	mitochondrion	61.32	17.57
TraesCS7A01G225400.2	Wheat	mitochondrion	61.32	17.52
EER89710	Sorghum	mitochondrion	61.32	17.52
GSMUA_Achr9P27590_001	Banana	mitochondrion	58.49	17.51
TraesCS7D01G229100.1	Wheat	mitochondrion	60.38	17.34
HORVU7Hr1G046890.1	Barley	plastid	61.32	16.75
VIT_08s0007g08760.t01	Wine grape	plastid	42.45	8.51
CDY58054	Canola	cytosol	0.0	0.0
Bra031685.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_05s0049g00110	EMBL:FN595496	EnsemblPlants:VIT_05s0049g00110.t01	EnsemblPlantsGene:VIT_05s0049g00110	Gene3D:3.50.50.60	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf
InterPro:IPR036188	InterPro:Pyridine_nuc-diS_OxRdtase_2	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	PRINTS:PR00469	ProteinID:CCB48518
ProteinID:CCB48518.1	SUPFAM:SSF51905	UniParc:UPI0002108177	UniProt:F6H8H5	MapMan:10.5.2	:

Description

No Description!

Coordinates

chr5:-:7173926..7175120

Molecular Weight (calculated)

11426.5 Da

IEP (calculated)

4.758

GRAVY (calculated)

-0.101

Length

106 amino acids

Sequence
(BLAST)

001: MANDIAPGGQ LTTTSDVENF PGFPDGINSN EIIDRCRAES LRFGTEIFTE TITRVDFSST PFKVFTDSKT ILADAVIVAT GAVAKRLPFP GSGGSFTRRE
101: ILLNKP

Best Arabidopsis Sequence Match ( AT4G35460.1 )
(BLAST)

001: MNCVSRLKCL ISKARSFARL GGESTLSQPP SLASAAFSSS AVMNGLETHN TRLCIVGSGP AAHTAAIYAA RAELKPLLFE GWMANDIAPG GQLTTTTDVE
101: NFPGFPEGIL GVELTDKFRK QSERFGTTIF TETVTKVDFS SKPFKLFTDS KAILADAVIL ATGAVAKRLS FVGSGEASGG FWNRGISACA VCDGAAPIFR
201: NKPLAVIGGG DSAMEEANFL TKYGSKVYII HRRDAFRASK IMQQRALSNP KIDVIWNSSV VEAYGDGERD VLGGLKVKNV VTGDVSDLKV SGLFFAIGHE
301: PATKFLDGGV ELDSDGYVVT KPGTTQTSVP GVFAAGDVQD KKYRQAITAA GTGCMAALDA EHYLQEIGSQ QGKSD

Arabidopsis Description

NTR1Thioredoxin reductase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q39243]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.