Factsheet for PGSC0003DMT400048037

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g032000.2.1	Tomato	cytosol, extracellular	99.39	99.39
CDY26806	Canola	cytosol, mitochondrion, peroxisome	31.4	81.1
PGSC0003DMT400035477	Potato	mitochondrion	87.8	78.47
Os02t0713400-01	Rice	extracellular, plasma membrane	78.96	78.25
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	78.96	78.01
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	78.66	77.95
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	78.66	77.71
TraesCS6B01G306300.1	Wheat	cytosol	78.35	77.41
EES07372	Sorghum	cytosol, mitochondrion	78.05	77.34
Bra017711.1-P	Field mustard	cytosol	70.43	74.04
Zm00001d017823_P001	Maize	cytosol	77.74	72.44
VIT_04s0044g01750.t01	Wine grape	mitochondrion	82.62	72.27
KRH76499	Soybean	nucleus	81.4	72.16
CDX74655	Canola	peroxisome, plastid	37.8	72.09
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	64.02	71.92
KRH28954	Soybean	nucleus	80.49	70.97
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	64.33	70.81
Bra037274.1-P	Field mustard	mitochondrion	71.95	70.66
EES09948	Sorghum	mitochondrion	72.87	70.5
AT4G35460.1	Thale cress	mitochondrion, plastid	79.88	69.87
CDX72537	Canola	mitochondrion	76.52	69.72
AT2G17420.1	Thale cress	mitochondrion, plastid	81.4	69.71
CDY41653	Canola	mitochondrion	78.96	69.25
CDY24812	Canola	mitochondrion	78.35	68.9
TraesCS7B01G194200.1	Wheat	golgi	77.44	68.83
EER89710	Sorghum	mitochondrion	77.74	68.73
CDY40633	Canola	mitochondrion	76.22	68.68
TraesCS7D01G229100.1	Wheat	mitochondrion	77.13	68.56
TraesCS7A01G225400.2	Wheat	mitochondrion	77.44	68.46
CDY72417	Canola	cytosol	15.85	68.42
CDY22142	Canola	cytosol	15.85	68.42
Zm00001d053118_P001	Maize	cytosol	72.56	68.19
Zm00001d037429_P001	Maize	mitochondrion	76.83	68.11
CDY30367	Canola	mitochondrion	71.04	67.93
VIT_05s0049g00110.t01	Wine grape	cytosol	21.95	67.92
Bra010533.1-P	Field mustard	mitochondrion	72.87	67.9
CDY07845	Canola	plastid	70.73	67.44
CDY05719	Canola	cytosol	36.59	67.04
GSMUA_Achr9P27590_001	Banana	mitochondrion	71.95	66.67
Bra025646.1-P	Field mustard	cytosol	15.55	65.38
HORVU7Hr1G046890.1	Barley	plastid	77.13	65.21
KRH07823	Soybean	mitochondrion	75.3	62.69
CDY58054	Canola	cytosol	18.29	56.07
Bra031685.1-P	Field mustard	cytosol	17.99	55.14
CDX74431	Canola	cytosol	22.87	51.02
Bra037273.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.52	48.64
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	76.52	48.55
CDY13332	Canola	plastid	38.41	46.15
CDY26805	Canola	vacuole	20.12	43.42
CDY70273	Canola	cytosol, peroxisome	16.16	41.41
CDY26807	Canola	cytosol, mitochondrion	78.05	38.73
Os04t0524136-00	Rice	plastid	19.82	32.66
PGSC0003DMT400060907	Potato	plastid	50.0	30.2
PGSC0003DMT400070103	Potato	plastid	17.99	27.44
Bra025645.1-P	Field mustard	cytosol	17.99	26.46
PGSC0003DMT400070106	Potato	cytosol	16.16	22.94

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:102598915	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0055114	InterPro:IPR036188	UniProt:M1BLV1	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400018665
PGSC:PGSC0003DMG400018665	EnsemblPlants:PGSC0003DMT400048037	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PANTHER:PTHR42863
PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase
UniParc:UPI000296A51A	RefSeq:XP_006343316.1	SEG:seg	:	:	:

Description

Thioredoxin reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400018665]

Coordinates

chr3:+:3005781..3009703

Molecular Weight (calculated)

34873.4 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.076

Length

328 amino acids

Sequence
(BLAST)

001: MADIQKTKVC IIGSGPAAHT AAIYAARAEL KPILFEGWMA NDIAPGGQLT TTSEVENFPG FPEGLAGGEL MDRCRAQSVR FGTQIFTETV SNVDFSASPF
101: KVMSDERTVL ADAVIIATGA VAKRLEFPGS GDGANGYWNR GISACAVCDG AAPIFRNKPL AVIGGGDSAM EEATFLTKYG SKVYIIHRRD EFRASKIMRN
201: RALSNPKIEV IWNSAVVEAY GEKSLGGLKV ENVVTGEVSD LEVSGLFFAI GHEPATKFLD GQLQLDAERY VATVPGTTKT SVRGVFAAGD VQDKKYRQAI
301: TAAGSGCMAA LDAEHYLQEL GAQEGKSD

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.