Factsheet for PGSC0003DMT400070103

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029584
PGSC0003DMT400039329
PGSC0003DMT400057872
PGSC0003DMT400060907
PGSC0003DMT400061915
PGSC0003DMT400066172
PGSC0003DMT400070103
PGSC0003DMT400070106

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	PGSC0003DMT400029584	AT1G02870.1	21798944
AT2G41680.1	PGSC0003DMT400066172	AT1G49850.1	21798944
AT2G41680.1	PGSC0003DMT400061915	AT1G76760.1	21798944
AT2G41680.1	PGSC0003DMT400060907	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400070103	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400070106	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400057872	AT3G04860.1	21798944
AT2G41680.1	PGSC0003DMT400039329	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g016010.2.1	Tomato	nucleus	86.98	34.82
GSMUA_Achr8P09570_001	Banana	cytosol	24.65	30.29
PGSC0003DMT400060907	Potato	plastid	54.88	21.73
HORVU2Hr1G023170.1	Barley	cytosol	43.72	19.5
VIT_08s0007g08760.t01	Wine grape	plastid	47.91	19.47
KRH72015	Soybean	nucleus	46.51	19.16
CDY35405	Canola	plastid	45.12	18.98
KRH33290	Soybean	nucleus	45.58	18.88
Bra000234.1-P	Field mustard	plastid	44.65	18.79
CDY22534	Canola	plastid	44.65	18.79
TraesCS2B01G154700.1	Wheat	plastid	44.65	18.46
KXG36845	Sorghum	plastid	44.65	18.32
Os07t0657900-02	Rice	plastid	43.72	18.25
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	47.91	18.2
Bra004639.1-P	Field mustard	plastid	43.72	18.04
PGSC0003DMT400048037	Potato	cytosol	27.44	17.99
AT2G41680.1	Thale cress	plastid	43.72	17.77
CDX79923	Canola	mitochondrion, plastid	43.72	17.6
CDY23835	Canola	plastid	42.79	16.94
Zm00001d022381_P016	Maize	plastid	43.26	16.82
PGSC0003DMT400035477	Potato	mitochondrion	27.44	16.08
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.19	15.91
PGSC0003DMT400070106	Potato	cytosol	0.47	0.43
GSMUA_Achr8P09560_001	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:10.5.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188	UniProt:M1CLP3
PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG401027256	PGSC:PGSC0003DMG401027256	EnsemblPlants:PGSC0003DMT400070103	PRINTS:PR00368	PRINTS:PR00469
PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	UniParc:UPI0002950961	SEG:seg

Description

Thioredoxin reductase [Source:PGSC_GENE;Acc:PGSC0003DMG401027256]

Coordinates

chr4:+:10420879..10428000

Molecular Weight (calculated)

22554.9 Da

IEP (calculated)

5.946

GRAVY (calculated)

0.050

Length

215 amino acids

Sequence
(BLAST)

001: MATTIPNING AVVAGIGTGT EISCNATRRS VFGLMPAPST LSTALRIPTG SLLINSGPSR AGRVDSFLTG FSFSSSSIRS FAAESAGEQV QAHSSAQGIE
101: NLVIVGSGPA GYTAAIYAAR ANLKPVVFEG FQVGGVPGGQ LMTTTEVENF PGFPDGITGP DLMDRMRRQA ERWGGELFQE DVEFIDVKNT PFTVRSSERK
201: VMLPFGCRSS AIVLS

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.