Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- peroxisome 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g097790.2.1 | Tomato | cytosol | 99.33 | 99.33 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 72.58 | 76.14 |
| KRG92651 | Soybean | cytosol | 71.91 | 71.67 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 70.9 | 70.43 |
| KRH68710 | Soybean | plastid | 68.9 | 69.36 |
| KRG96949 | Soybean | cytosol, plastid | 69.9 | 68.3 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 58.53 | 67.05 |
| CDY52485 | Canola | plastid | 63.88 | 65.19 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 62.88 | 65.05 |
| AT3G04860.1 | Thale cress | plastid | 62.88 | 65.05 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 63.21 | 64.95 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 62.88 | 64.83 |
| EER93250 | Sorghum | cytosol, plastid | 62.88 | 64.6 |
| TraesCS5A01G456500.1 | Wheat | plastid | 62.54 | 64.04 |
| CDX86191 | Canola | plastid | 62.54 | 63.82 |
| Bra009991.1-P | Field mustard | plastid | 62.54 | 63.82 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 62.21 | 63.7 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 56.19 | 63.64 |
| Zm00001d013042_P001 | Maize | plastid | 61.87 | 63.57 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 60.54 | 63.07 |
| CDY00013 | Canola | cytosol, plastid | 62.21 | 63.05 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 60.2 | 62.94 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 59.2 | 62.77 |
| Zm00001d034527_P001 | Maize | plastid | 60.87 | 61.9 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 62.54 | 61.72 |
| CDY21108 | Canola | plastid | 57.86 | 61.35 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 62.54 | 60.71 |
| CDY30020 | Canola | cytosol, plastid | 57.19 | 60.64 |
| Bra040118.1-P | Field mustard | plastid | 57.19 | 60.64 |
| Os07t0572300-01 | Rice | plastid | 53.51 | 56.34 |
| TraesCS5B01G465500.1 | Wheat | plastid | 62.54 | 55.65 |
| HORVU2Hr1G038060.1 | Barley | plastid | 51.84 | 55.36 |
| TraesCS2D01G204300.1 | Wheat | plastid | 52.17 | 55.12 |
| TraesCS2B01G223900.1 | Wheat | plastid | 51.51 | 54.42 |
| TraesCS2A01G196200.1 | Wheat | plastid | 51.51 | 54.42 |
| Zm00001d021869_P001 | Maize | plastid | 49.5 | 52.11 |
| Bra036119.1-P | Field mustard | mitochondrion | 62.54 | 48.95 |
| OQU90135 | Sorghum | plastid | 50.84 | 44.71 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 62.88 | 42.34 |
| PGSC0003DMT400069001 | Potato | plastid | 42.14 | 40.91 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 40.8 | 39.61 |
| PGSC0003DMT400018411 | Potato | cytosol | 38.8 | 38.28 |
| PGSC0003DMT400046694 | Potato | cytosol | 39.8 | 37.3 |
| PGSC0003DMT400006889 | Potato | nucleus | 18.39 | 35.95 |
| PGSC0003DMT400076600 | Potato | cytosol | 34.11 | 34.23 |
| PGSC0003DMT400068894 | Potato | plastid | 37.46 | 32.09 |
| PGSC0003DMT400089872 | Potato | cytosol, peroxisome, plastid | 30.77 | 26.51 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057872 | EnsemblPlantsGene:PGSC0003DMG400022474 | EntrezGene:102597851 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 |
| PFAM:PF05910 | PGSC:PGSC0003DMG400022474 | RefSeq:XP_006347793.1 | UniParc:UPI00029561D0 | UniProt:M1C1T7 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022474]
Coordinates
chr1:-:75452372..75454575
Molecular Weight (calculated)
33564.5 Da
IEP (calculated)
8.716
GRAVY (calculated)
-0.170
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE TGVQVADFSS SGANKAAQNL VTCVYQCKLR GKSCLLNVTW SKNLMGQGLT IGIDDNTNQC LCKVDIKPWL FSKKKGSKTL EAYSRKIDVC
101: WDLSSAKFGS GPEPLEGFYV CVVSERQMIL LLGDMKKEAI KKTSATPAAC GAVFIAKKEH MFGKKVFSTK AQFCDNGRVH DLVIECDTSG TSDPCLVIRV
201: DSKPMMQVKR LKWKFRGNHT MLVDGLGVEV FWDVHNWLFS TSVGSAVFMF KTNISAEKLW ATQPICDPQT LHWSWSQRFR EAQSHDLGFS LFLYAWKNE
101: WDLSSAKFGS GPEPLEGFYV CVVSERQMIL LLGDMKKEAI KKTSATPAAC GAVFIAKKEH MFGKKVFSTK AQFCDNGRVH DLVIECDTSG TSDPCLVIRV
201: DSKPMMQVKR LKWKFRGNHT MLVDGLGVEV FWDVHNWLFS TSVGSAVFMF KTNISAEKLW ATQPICDPQT LHWSWSQRFR EAQSHDLGFS LFLYAWKNE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.