CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRG99083
KRH05183
KRH12426
KRH15859
KRH27646
KRH67075
KRH77849

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	KRG99083	AT1G05410.1	21798944
AT3G04860.1	KRH27646	AT1G05410.1	21798944
AT3G04860.1	KRH77849	AT1G05410.1	21798944
AT3G04860.1	KRG95394	AT2G19650.1	21798944
AT3G04860.1	KRH67075	AT2G19650.1	21798944
AT3G04860.1	KRH05183	AT4G32190.1	21798944
AT3G04860.1	KRH15859	AT4G32190.1	21798944
AT5G28150.1	KRH12426	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68710	Soybean	plastid	93.79	96.63
KRG92651	Soybean	cytosol	78.1	79.67
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	77.78	79.07
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	73.2	78.6
PGSC0003DMT400057872	Potato	cytosol	68.3	69.9
Solyc01g097790.2.1	Tomato	cytosol	67.97	69.57
Bra009991.1-P	Field mustard	plastid	65.03	67.92
CDX86191	Canola	plastid	65.03	67.92
CDY52485	Canola	plastid	65.03	67.92
CDY00013	Canola	cytosol, plastid	65.36	67.8
KRG95548	Soybean	cytosol	65.03	66.11
AT3G04860.1	Thale cress	plastid	62.42	66.09
KRH71412	Soybean	cytosol	64.71	65.78
AT5G28150.1	Thale cress	cytosol, plastid	62.09	65.74
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	56.54	65.53
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	55.88	65.52
KRH32026	Soybean	cytosol, plastid	64.05	65.33
GSMUA_Achr5P24690_001	Banana	cytosol	61.44	64.83
CDY72112	Canola	cytosol, peroxisome, plastid	58.17	63.12
Bra040118.1-P	Field mustard	plastid	57.84	62.77
CDY50761	Canola	cytosol, peroxisome, plastid	58.82	62.72
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	58.5	62.59
HORVU5Hr1G109570.1	Barley	cytosol, plastid	59.48	62.33
CDY21108	Canola	plastid	57.19	62.06
TraesCS5A01G456500.1	Wheat	plastid	59.15	61.99
KRH67230	Soybean	cytosol	62.75	61.34
EER93250	Sorghum	cytosol, plastid	58.17	61.17
Zm00001d013042_P001	Maize	plastid	58.17	61.17
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	58.17	61.17
CDY30020	Canola	cytosol, plastid	56.21	60.99
Zm00001d034527_P001	Maize	plastid	56.54	58.84
TraesCS5D01G467300.1	Wheat	cytosol, plastid	58.17	57.79
Os07t0572300-01	Rice	plastid	50.0	53.87
HORVU2Hr1G038060.1	Barley	plastid	49.02	53.57
TraesCS5B01G465500.1	Wheat	plastid	58.5	53.27
TraesCS2D01G204300.1	Wheat	plastid	48.04	51.94
TraesCS2B01G223900.1	Wheat	plastid	48.04	51.94
Bra036119.1-P	Field mustard	mitochondrion	64.38	51.57
TraesCS2A01G196200.1	Wheat	plastid	46.73	50.53
Zm00001d021869_P001	Maize	plastid	46.08	49.65
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	64.71	44.59
OQU90135	Sorghum	plastid	47.71	42.94
KRH26585	Soybean	plastid	40.52	41.2
KRH22720	Soybean	plastid	40.52	41.06
KRH25175	Soybean	cytosol	39.22	37.85
KRH03859	Soybean	cytosol	32.68	37.31
KRH57148	Soybean	cytosol	39.54	37.12
KRH63641	Soybean	cytosol	39.22	36.81
KRH67854	Soybean	cytosol	36.6	36.36
KRH54304	Soybean	cytosol	38.56	36.2
KRH72631	Soybean	cytosol	36.27	36.16
KRH16994	Soybean	cytosol	35.95	36.07
KRH30504	Soybean	plastid	38.24	36.0
KRG96144	Soybean	nucleus	35.95	35.83
KRG90008	Soybean	plastid	34.31	33.33
KRH52365	Soybean	plastid	33.01	30.33
KRH61697	Soybean	plastid	30.07	29.58
KRH14191	Soybean	cytosol	30.07	29.58
KRG96948	Soybean	plastid	30.07	29.49
KRH68709	Soybean	plastid	28.76	28.85
KRG92733	Soybean	plastid	31.05	28.7
KRH34068	Soybean	plastid	31.05	28.7
KRH05263	Soybean	mitochondrion, plastid	29.41	26.47
KRH15788	Soybean	plastid	28.76	25.73

Protein Annotations

EMBL:ACUP02012169	EnsemblPlants:KRG96949	EnsemblPlantsGene:GLYMA_19G243200	EntrezGene:100806479	InterPro:DUF868_pln	PANTHER:PTHR31972
PANTHER:PTHR31972:SF4	PFAM:PF05910	ProteinID:KRG96949	ProteinID:KRG96949.1	SEG:seg	UniParc:UPI0006EDE8D1
UniProt:A0A0R0ETG3	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:49074582..49076358

Molecular Weight (calculated)

33643.5 Da

IEP (calculated)

8.701

GRAVY (calculated)

-0.066

Length

306 amino acids

Sequence
(BLAST)

001: MGFSDQVKKM KDFPSCFGEN GVQVADSSSS SANKSAQNVV TCVYQCRIGG ISCLITVTWS KNLMGQGLGV GIDDSSSQSL CKVDIKPWGF SKRRGCKSLE
101: VHSCKVDVYW DLSSAKFGSG PEPLGGFYVG AVVDGQMVLL LGDLRKEAFK KTNANPLPHN AVLVAKKEHV FGKKLHGTKA VFCDNGPIHD LVIECDTASV
201: GDPSLVIRID SKTVMQVKRL RWKFRGNHTI LVDGLAVEVF WDVHNWFFGT SLGNAVFMFR TCLSAADKLW ASQPPSDLAW SFSERFPETK LQGLSFSLIL
301: YAWKNQ

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.