CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01771
KRH11444
KRH36471
KRH39707
KRH46915
KRH51108
KRH76405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	KRH11444	AT4G21990.1	21798944
AT1G05410.1	KRH36471	AT4G21990.1	21798944
AT1G05410.1	KRH51108	AT4G21990.1	21798944
AT1G05410.1	KRH01771	AT5G49210.1	21798944
AT1G05410.1	KRH46915	AT5G49210.1	21798944
AT1G05410.1	KRH39707	AT5G61230.1	21798944
AT1G05410.1	KRH76405	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99083	Soybean	nucleus	93.75	92.4
KRH27646	Soybean	cytosol, nucleus	84.38	84.91
PGSC0003DMT400041923	Potato	cytosol	16.46	51.63
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	18.12	50.29
Solyc09g061590.1.1	Tomato	cytosol	10.0	48.48
Solyc09g060020.1.1	Tomato	cytosol	7.29	46.67
Solyc09g060060.1.1	Tomato	cytosol	5.83	46.67
Solyc09g059870.1.1	Tomato	cytosol	12.5	46.15
Solyc09g082140.2.1	Tomato	cytosol, nucleus	31.67	45.92
PGSC0003DMT400082107	Potato	cytosol	43.33	44.64
CDY10107	Canola	cytosol	43.33	44.16
CDY47288	Canola	cytosol	42.92	43.74
AT1G05410.1	Thale cress	cytosol	42.71	43.52
Bra015422.1-P	Field mustard	cytosol	42.5	43.5
Solyc09g061600.1.1	Tomato	cytosol	7.08	43.04
PGSC0003DMT400092399	Potato	cytosol	21.04	42.98
Solyc06g054230.2.1	Tomato	cytosol	28.96	42.38
Solyc09g061370.1.1	Tomato	cytosol	16.88	41.75
Solyc09g061500.1.1	Tomato	cytosol	10.62	40.8
Solyc06g054200.1.1	Tomato	cytosol	18.75	40.72
PGSC0003DMT400077585	Potato	cytosol	16.46	40.72
VIT_05s0020g03600.t01	Wine grape	cytosol	41.67	40.49
Solyc09g061260.1.1	Tomato	cytosol	28.96	40.41
PGSC0003DMT400059456	Potato	cytosol	29.58	40.11
Solyc09g059890.1.1	Tomato	cytosol	18.33	39.82
Solyc09g059740.1.1	Tomato	cytosol	22.92	39.43
Solyc09g061560.1.1	Tomato	mitochondrion	13.54	38.69
Solyc09g061490.1.1	Tomato	nucleus	10.62	38.64
Solyc06g054210.1.1	Tomato	nucleus	10.62	38.64
GSMUA_Achr7P27170_001	Banana	cytosol	39.38	37.95
Solyc06g054190.1.1	Tomato	cytosol	10.42	37.88
Solyc06g054180.1.1	Tomato	cytosol	19.38	37.65
Solyc06g054170.1.1	Tomato	cytosol	10.21	37.12
Solyc09g059900.1.1	Tomato	cytosol	5.0	36.36
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	18.96	36.11
Solyc09g059910.1.1	Tomato	extracellular	19.79	35.98
PGSC0003DMT400077583	Potato	nucleus	30.42	35.96
Os03t0747200-01	Rice	cytosol	33.12	35.18
PGSC0003DMT400090844	Potato	cytosol	8.33	33.33
Solyc09g061360.1.1	Tomato	nucleus	6.88	31.73
Solyc09g060010.1.1	Tomato	extracellular	9.38	29.8
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	38.12	26.22
TraesCS5B01G390300.3	Wheat	cytosol	38.12	26.22
Solyc10g018690.1.1	Tomato	cytosol	4.58	25.88
TraesCS5A01G385300.3	Wheat	cytosol	37.5	25.79
Zm00001d034000_P002	Maize	cytosol	36.67	25.43
HORVU5Hr1G094660.1	Barley	plastid	23.75	25.22
EER90880	Sorghum	cytosol	35.42	24.75
Solyc09g059860.1.1	Tomato	cytosol	4.17	24.69
PGSC0003DMT400077587	Potato	nucleus	19.17	18.62
KRH76186	Soybean	nucleus	16.25	17.11
KRH76190	Soybean	nucleus	16.25	17.11
KRG90260	Soybean	nucleus	15.21	15.53
KRH65951	Soybean	plastid	10.83	15.07
KRH33505	Soybean	nucleus	15.21	12.7

Protein Annotations

EMBL:ACUP02000685	EnsemblPlants:KRH77849	EnsemblPlantsGene:GLYMA_01G237400	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2
PFAM:PF07227	ProteinID:KRH77849	ProteinID:KRH77849.1	SEG:seg	UniParc:UPI000295F1FA	UniProt:K7K5I8
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:56233843..56236890

Molecular Weight (calculated)

53959.2 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.441

Length

480 amino acids

Sequence
(BLAST)

001: MEMENNGFLN LQAVAPEMSG EGFPYAPENW PEDGDIWGWR TGRRIVANRS HFQDRYLYLP NRLIRALKEE KEKENPGSGA DSGSSSSSIR RQQHIFASKL
101: AVERYIKTYF PDADIDAFFA SFSWKIPALR SNGNALPIAA VPLQQIAQEA YDSDSGDVVK CKARNKKCTS LVLEEIEKYS PAMHCDICCS EPGFCRDCCC
201: ILCCKTVSSA YGGYNYIKCQ VNSGGGICGH VAHMECALRC LLAGKVGGNI GLDAQYHCRR CDGRTDMISH VNNLLQTCRA ADLDDEIRKK ILNLGACLLR
301: GSQKPVAKEL LCRIELAISK LKCGTNLEDI WKEDDSFIAH SADNGNDVME VMVYDDPFEV RTGLESYDFL PRSIKLESEV DQVLRALRKS QELEYKVAEE
401: TLQDQKTYLK NLYQQLDCEK YELACQNSST SDVSSSAVRE RKKQIRREVA KFEIMKKVAN GFGRTSNDIV KEHFGLKVID

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.