CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79117
CDX82892
CDX86248
CDX87205
CDX94072
CDX98723
CDY02163
CDY16818
CDY23077
CDY33924
CDY56435
CDY70877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	CDX79117	AT4G21990.1	21798944
AT1G05410.1	CDX82892	AT4G21990.1	21798944
AT1G05410.1	CDX94072	AT4G21990.1	21798944
AT1G05410.1	CDX98723	AT4G21990.1	21798944
AT1G05410.1	CDX86248	AT5G49210.1	21798944
AT1G05410.1	CDY33924	AT5G49210.1	21798944
AT1G05410.1	CDY56435	AT5G49210.1	21798944
AT1G05410.1	CDY70877	AT5G49210.1	21798944
AT1G05410.1	CDX87205	AT5G61230.1	21798944
AT1G05410.1	CDY02163	AT5G61230.1	21798944
AT1G05410.1	CDY16818	AT5G61230.1	21798944
AT1G05410.1	CDY23077	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47288	Canola	cytosol	95.54	95.54
Bra015422.1-P	Field mustard	cytosol	94.06	94.46
AT1G05410.1	Thale cress	cytosol	74.31	74.31
Solyc09g061590.1.1	Tomato	cytosol	12.31	58.59
PGSC0003DMT400041923	Potato	cytosol	18.9	58.17
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	21.02	57.23
Solyc09g060020.1.1	Tomato	cytosol	8.49	53.33
Solyc09g060060.1.1	Tomato	cytosol	6.58	51.67
Solyc09g061370.1.1	Tomato	cytosol	19.53	47.42
Solyc09g061600.1.1	Tomato	cytosol	7.86	46.84
Solyc09g082140.2.1	Tomato	cytosol, nucleus	32.48	46.22
Solyc06g054230.2.1	Tomato	cytosol	31.85	45.73
Solyc06g054200.1.1	Tomato	cytosol	21.23	45.25
Solyc09g061500.1.1	Tomato	cytosol	11.89	44.8
VIT_05s0020g03600.t01	Wine grape	cytosol	46.71	44.53
PGSC0003DMT400082107	Potato	cytosol	43.95	44.42
PGSC0003DMT400077585	Potato	cytosol	18.05	43.81
PGSC0003DMT400092399	Potato	cytosol	21.66	43.4
KRH77849	Soybean	nucleus	44.16	43.33
Solyc09g059870.1.1	Tomato	cytosol	11.89	43.08
Solyc09g059900.1.1	Tomato	cytosol	5.94	42.42
Solyc09g061560.1.1	Tomato	mitochondrion	15.07	42.26
PGSC0003DMT400059456	Potato	cytosol	31.63	42.09
KRG99083	Soybean	nucleus	43.31	41.89
KRH27646	Soybean	cytosol, nucleus	42.25	41.72
Solyc09g059890.1.1	Tomato	cytosol	19.53	41.63
GSMUA_Achr7P27170_001	Banana	cytosol	43.95	41.57
Solyc09g059740.1.1	Tomato	cytosol	24.42	41.22
Solyc06g054180.1.1	Tomato	cytosol	21.44	40.89
Solyc09g061260.1.1	Tomato	cytosol	29.72	40.7
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	21.23	39.68
Solyc06g054170.1.1	Tomato	cytosol	10.83	38.64
Solyc06g054210.1.1	Tomato	nucleus	10.62	37.88
Solyc06g054190.1.1	Tomato	cytosol	10.62	37.88
Solyc09g061490.1.1	Tomato	nucleus	10.4	37.12
PGSC0003DMT400077583	Potato	nucleus	31.42	36.45
Os03t0747200-01	Rice	cytosol	34.39	35.84
Solyc09g061360.1.1	Tomato	nucleus	7.86	35.58
Solyc09g059910.1.1	Tomato	extracellular	19.53	34.85
PGSC0003DMT400090844	Potato	cytosol	8.7	34.17
Solyc09g060010.1.1	Tomato	extracellular	9.77	30.46
Solyc10g018690.1.1	Tomato	cytosol	5.31	29.41
Solyc09g059860.1.1	Tomato	cytosol	4.88	28.4
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	38.22	25.79
TraesCS5B01G390300.3	Wheat	cytosol	38.22	25.79
TraesCS5A01G385300.3	Wheat	cytosol	38.0	25.64
Zm00001d034000_P002	Maize	cytosol	36.94	25.14
EER90880	Sorghum	cytosol	36.31	24.89
HORVU5Hr1G094660.1	Barley	plastid	22.93	23.89
PGSC0003DMT400077587	Potato	nucleus	17.83	17.0
CDY08296	Canola	nucleus	15.29	13.82
CDY06487	Canola	nucleus	14.86	12.99
CDY10650	Canola	nucleus	15.92	12.89
CDY34248	Canola	nucleus	15.5	12.35
CDY10289	Canola	nucleus	15.29	12.16
CDX98211	Canola	nucleus	15.07	12.07
CDX92945	Canola	nucleus	14.44	11.99
CDY24312	Canola	nucleus	14.44	11.95
CDY38302	Canola	nucleus	15.07	10.3

Protein Annotations

EnsemblPlants:CDY10107	EnsemblPlantsGene:GSBRNA2T00031910001	InterPro:Oberon_PHD	ncoils:Coil	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2
PFAM:PF07227	ProteinID:CDY10107	ProteinID:CDY10107.1	SEG:seg	UniParc:UPI0004EE3539	UniProt:A0A078FAR8
MapMan:35.2	:	:	:	:	:

Description

BnaC05g03500DBnaC05g03500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAR8]

Coordinates

chrLK032001:+:60590..62960

Molecular Weight (calculated)

53247.4 Da

IEP (calculated)

4.957

GRAVY (calculated)

-0.477

Length

471 amino acids

Sequence
(BLAST)

001: MDTDTTTTDQ SNREVVPPRL HLRPVRPMES GIGLPYAPEN WPKPGDTWRW KVGPRITGKG TFLDRYLYPP KHLPGLSNTE TLRKGTAFRS RLSLERYIRL
101: AFPDADVRKF FASFSWAVPS TDAIGMKRSI LPVYTSDEDP MHDNVSDIMV CKAGNDKCGS LMMPPPSETE PMTCDICCSE PSFCTDCSCI LCCKSVSVEH
201: EGYSYTKCEA VVSEGRICGH VAHINCALRA YMAGTVGGSI GLDAEYYCRR CDARKDLVPH VNRFLEICKT VEYQGDVEKI LNLGICVLRG SQRVDAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD FSESEGKDND DAVQSLQDVT PIEPMPFNRE AEMHKLEEEI REVLKALREA QESEYQIAEV RLHAQKECLG
401: DLYRQLEEEK SELSRRVSGS DAESLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGI LEEYFHLAIE E

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.