CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX71689
CDX73866
CDX76980
CDX78461
CDX90483
CDX91181
CDY01038
CDY08511
CDY09638
CDY32642
CDY35358
CDY35590
CDY38850
CDY42967
CDY56601
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	CDX76980	AT2G25490.1	21798944
AT5G49210.1	CDY35358	AT2G25490.1	21798944
AT5G49210.1	CDX73866	AT3G11590.1	21798944
AT5G49210.1	CDY01038	AT3G11590.1	21798944
AT5G49210.1	CDY08511	AT3G11590.1	21798944
AT5G49210.1	CDY56601	AT3G11590.1	21798944
AT5G49210.1	CDX90483	AT4G17220.1	21798944
AT5G49210.1	CDY09638	AT4G17220.1	21798944
AT5G49210.1	CDY35590	AT4G17220.1	21798944
AT5G49210.1	CDY42967	AT4G17220.1	21798944
AT5G49210.1	CDX70438	AT5G11980.1	21798944
AT5G49210.1	CDX78461	AT5G11980.1	21798944
AT5G49210.1	CDX91181	AT5G11980.1	21798944
AT5G49210.1	CDY67814	AT5G11980.1	21798944
AT5G49210.1	CDX71689	AT5G51110.1	21798944
AT5G49210.1	CDY32642	AT5G51110.1	21798944
AT5G49210.1	CDY38850	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037430.1-P	Field mustard	mitochondrion	99.48	99.48
CDY56435	Canola	mitochondrion	95.34	95.34
CDY33924	Canola	mitochondrion, nucleus	85.49	83.76
AT5G49210.1	Thale cress	mitochondrion	76.68	75.9
CDY70877	Canola	mitochondrion	85.49	73.01
KRH01771	Soybean	mitochondrion	46.11	50.86
Solyc05g053730.2.1	Tomato	nucleus	52.33	50.5
PGSC0003DMT400040750	Potato	mitochondrion	51.81	50.0
KRH46915	Soybean	mitochondrion	45.6	49.44
VIT_05s0029g01220.t01	Wine grape	mitochondrion	47.15	46.43
Zm00001d004927_P001	Maize	mitochondrion	39.38	40.86
Os11t0148600-01	Rice	mitochondrion	39.38	40.86
OQU82869	Sorghum	mitochondrion	37.82	40.11
TraesCS4B01G134100.1	Wheat	mitochondrion	39.38	39.79
TraesCS4A01G184600.1	Wheat	mitochondrion	38.86	39.27
TraesCS4D01G129000.1	Wheat	mitochondrion	38.86	39.27
GSMUA_Achr1P11210_001	Banana	mitochondrion	39.38	35.68
HORVU4Hr1G025670.1	Barley	mitochondrion	38.86	34.72
Os12t0146400-01	Rice	mitochondrion	17.1	31.13
KXG38100	Sorghum	plastid	26.94	22.71

Protein Annotations

EnsemblPlants:CDX86248	EnsemblPlantsGene:GSBRNA2T00144352001	ncoils:Coil	PANTHER:PTHR36402	ProteinID:CDX86248	ProteinID:CDX86248.1
SEG:seg	UniParc:UPI0004EE450B	MapMan:35.2	:	:	:

Description

BnaA06g29650D

Coordinates

chrLK031845:-:589030..590660

Molecular Weight (calculated)

23199.9 Da

IEP (calculated)

10.277

GRAVY (calculated)

-1.056

Length

193 amino acids

Sequence
(BLAST)

001: MSLCNQLSRL VRQGPVTKHY FRSFSAEAAT HHRYHQETHS FLEPESYIGS WEAPKDPKDA ERMLAQLRRD YAKKVSLYRK DYVHEIEMLR VEKQRKDEAR
101: LVAERAVNEE RRRLKAEAAK VRAEERKIFQ DEFRKTLMKE RAEKLEFWRM TGLKREEKKK ARKKLLHEQS SLWIEPKELE KKITEALVDS TTL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.