CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX71689
CDX73866
CDX76980
CDX78461
CDX90483
CDX91181
CDY01038
CDY08511
CDY09638
CDY32642
CDY35358
CDY35590
CDY38850
CDY42967
CDY56601
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	CDX76980	AT2G25490.1	21798944
AT5G49210.1	CDY35358	AT2G25490.1	21798944
AT5G49210.1	CDX73866	AT3G11590.1	21798944
AT5G49210.1	CDY01038	AT3G11590.1	21798944
AT5G49210.1	CDY08511	AT3G11590.1	21798944
AT5G49210.1	CDY56601	AT3G11590.1	21798944
AT5G49210.1	CDX90483	AT4G17220.1	21798944
AT5G49210.1	CDY09638	AT4G17220.1	21798944
AT5G49210.1	CDY35590	AT4G17220.1	21798944
AT5G49210.1	CDY42967	AT4G17220.1	21798944
AT5G49210.1	CDX70438	AT5G11980.1	21798944
AT5G49210.1	CDX78461	AT5G11980.1	21798944
AT5G49210.1	CDX91181	AT5G11980.1	21798944
AT5G49210.1	CDY67814	AT5G11980.1	21798944
AT5G49210.1	CDX71689	AT5G51110.1	21798944
AT5G49210.1	CDY32642	AT5G51110.1	21798944
AT5G49210.1	CDY38850	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020657.1-P	Field mustard	mitochondrion, nucleus	99.49	99.49
CDY56435	Canola	mitochondrion	84.77	86.53
CDX86248	Canola	mitochondrion	83.76	85.49
CDY70877	Canola	mitochondrion	96.45	84.07
AT5G49210.1	Thale cress	mitochondrion	75.63	76.41
Solyc05g053730.2.1	Tomato	nucleus	50.25	49.5
PGSC0003DMT400040750	Potato	mitochondrion	49.75	49.0
KRH01771	Soybean	mitochondrion	43.15	48.57
KRH46915	Soybean	mitochondrion	43.15	47.75
VIT_05s0029g01220.t01	Wine grape	mitochondrion	45.69	45.92
Zm00001d004927_P001	Maize	mitochondrion	39.09	41.4
Os11t0148600-01	Rice	mitochondrion	39.09	41.4
OQU82869	Sorghum	mitochondrion	37.56	40.66
TraesCS4B01G134100.1	Wheat	mitochondrion	39.09	40.31
TraesCS4A01G184600.1	Wheat	mitochondrion	38.58	39.79
TraesCS4D01G129000.1	Wheat	mitochondrion	38.58	39.79
GSMUA_Achr1P11210_001	Banana	mitochondrion	39.09	36.15
HORVU4Hr1G025670.1	Barley	mitochondrion	39.09	35.65
Os12t0146400-01	Rice	mitochondrion	16.75	31.13
KXG38100	Sorghum	plastid	26.9	23.14

Protein Annotations

EnsemblPlants:CDY33924	EnsemblPlantsGene:GSBRNA2T00055433001	ncoils:Coil	PANTHER:PTHR36402	ProteinID:CDY33924	ProteinID:CDY33924.1
SEG:seg	UniParc:UPI0004EE1921	UniProt:A0A078H8V1	MapMan:35.2	:	:

Description

BnaA02g30630DBnaA02g30630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8V1]

Coordinates

chrLK032324:-:300042..301614

Molecular Weight (calculated)

23810.4 Da

IEP (calculated)

10.081

GRAVY (calculated)

-1.146

Length

197 amino acids

Sequence
(BLAST)

001: MSFCNKLSRV VRHQSETTSS MITSLRSFSS EAATHHRYHQ ETHSFLEPER YINSWEPAKD PRDAERMLAQ LRRDYAKKVS LYRKDYVHEI EMLRVEKQRK
101: DEARLVAERA ANEERRRLKA EAAKVRAEER KVFEEEFRRT LMKEREEKLE FWRMTGLKRE DKKKDKKKLL HEQSSLWIEP KELEKKITEA LVESTTL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.