Factsheet for Solyc09g059890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060020.1.1	Tomato	cytosol	23.08	68.0
Solyc09g060060.1.1	Tomato	cytosol	15.84	58.33
Solyc09g061600.1.1	Tomato	cytosol	20.36	56.96
Solyc09g059900.1.1	Tomato	cytosol	16.74	56.06
Solyc09g061590.1.1	Tomato	cytosol	24.43	54.55
Solyc09g059870.1.1	Tomato	cytosol	30.77	52.31
Solyc06g054210.1.1	Tomato	nucleus	28.51	47.73
Solyc06g054190.1.1	Tomato	cytosol	28.05	46.97
Solyc06g054170.1.1	Tomato	cytosol	27.6	46.21
Solyc09g060010.1.1	Tomato	extracellular	29.86	43.71
Solyc09g061490.1.1	Tomato	nucleus	25.79	43.18
Solyc09g061260.1.1	Tomato	cytosol	66.97	43.02
Solyc06g054230.2.1	Tomato	cytosol	63.35	42.68
Solyc09g061360.1.1	Tomato	nucleus	19.91	42.31
Solyc09g059910.1.1	Tomato	extracellular	48.87	40.91
Solyc09g059860.1.1	Tomato	cytosol	14.93	40.74
Solyc09g059740.1.1	Tomato	cytosol	50.23	39.78
Solyc09g061370.1.1	Tomato	cytosol	33.48	38.14
Solyc06g054200.1.1	Tomato	cytosol	35.29	35.29
Solyc09g061500.1.1	Tomato	cytosol	19.46	34.4
Solyc10g018690.1.1	Tomato	cytosol	12.22	31.76
Solyc09g061560.1.1	Tomato	mitochondrion	23.98	31.55
Solyc06g054180.1.1	Tomato	cytosol	33.94	30.36
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	33.94	29.76
Solyc09g061540.1.1	Tomato	cytosol	15.38	29.31
Solyc09g061580.1.1	Tomato	cytosol	14.93	28.45
Bra015422.1-P	Field mustard	cytosol	42.53	20.04
CDY47288	Canola	cytosol	42.53	19.96
Solyc09g082140.2.1	Tomato	cytosol, nucleus	29.41	19.64
CDY10107	Canola	cytosol	41.63	19.53
VIT_05s0020g03600.t01	Wine grape	cytosol	43.44	19.43
AT1G05410.1	Thale cress	cytosol	40.27	18.9
KRG99083	Soybean	nucleus	41.18	18.69
KRH27646	Soybean	cytosol, nucleus	40.27	18.66
KRH77849	Soybean	nucleus	39.82	18.33
PGSC0003DMT400077587	Potato	nucleus	34.39	15.38
Solyc09g082130.2.1	Tomato	nucleus	10.41	5.56

Protein Annotations

EnsemblPlants:Solyc09g059890.1.1	EnsemblPlantsGene:Solyc09g059890.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
SEG:seg	UniParc:UPI000276B93D	UniProt:K4CTS3	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr9:+:56363957..56364959

Molecular Weight (calculated)

25263.7 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.203

Length

221 amino acids

Sequence
(BLAST)

001: MSCDSGEGLP YAPVDFPNVG DKWGWRVGKR FSITGTFRDR YLYLLKHFKP PKGGQKYAFR SKIFVEKYLQ SEYPKMDIKK NSSFGWMIPS KKSPSSKLNL
101: IFVDAFVLSF AAKMISSDDD GYNYVRCEAT IDVYMCGHVS HQDWALRTYM VGNVGGSINL YAQYLCRYCY SRMDLVPHAL KLIKTCTSIS SCADIEKIFN
201: VGICILRHTQ KISGKELLHH I

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.