Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017291 | Potato | cytosol, peroxisome, plastid | 62.75 | 89.6 |
| Solyc09g061590.1.1 | Tomato | cytosol | 31.98 | 79.8 |
| PGSC0003DMT400041923 | Potato | cytosol | 49.39 | 79.74 |
| Solyc06g054160.1.1 | Tomato | cytosol, peroxisome, plastid | 78.14 | 76.59 |
| Solyc09g060020.1.1 | Tomato | cytosol | 21.05 | 69.33 |
| Solyc09g060060.1.1 | Tomato | cytosol | 16.6 | 68.33 |
| Solyc06g054200.1.1 | Tomato | cytosol | 60.32 | 67.42 |
| Solyc09g061370.1.1 | Tomato | cytosol | 51.42 | 65.46 |
| Solyc09g061600.1.1 | Tomato | cytosol | 20.65 | 64.56 |
| Solyc09g061540.1.1 | Tomato | cytosol | 29.55 | 62.93 |
| Solyc09g061580.1.1 | Tomato | cytosol | 29.55 | 62.93 |
| Solyc09g061500.1.1 | Tomato | cytosol | 31.58 | 62.4 |
| Solyc09g061560.1.1 | Tomato | mitochondrion | 40.89 | 60.12 |
| Solyc09g059900.1.1 | Tomato | cytosol | 14.57 | 54.55 |
| Solyc06g054230.2.1 | Tomato | cytosol | 54.25 | 40.85 |
| Solyc09g059870.1.1 | Tomato | cytosol | 19.03 | 36.15 |
| Solyc09g061260.1.1 | Tomato | cytosol | 49.39 | 35.47 |
| Solyc09g059890.1.1 | Tomato | cytosol | 30.36 | 33.94 |
| Solyc09g082140.2.1 | Tomato | cytosol, nucleus | 43.72 | 32.63 |
| Solyc09g059910.1.1 | Tomato | extracellular | 34.82 | 32.58 |
| Solyc09g059740.1.1 | Tomato | cytosol | 34.01 | 30.11 |
| Solyc09g060010.1.1 | Tomato | extracellular | 13.36 | 21.85 |
| CDY10107 | Canola | cytosol | 40.89 | 21.44 |
| Bra015422.1-P | Field mustard | cytosol | 40.49 | 21.32 |
| CDY47288 | Canola | cytosol | 40.49 | 21.23 |
| AT1G05410.1 | Thale cress | cytosol | 40.08 | 21.02 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 41.7 | 20.85 |
| KRH27646 | Soybean | cytosol, nucleus | 38.46 | 19.92 |
| KRH77849 | Soybean | nucleus | 37.65 | 19.38 |
| KRG99083 | Soybean | nucleus | 38.06 | 19.3 |
| Solyc09g059860.1.1 | Tomato | cytosol | 1.62 | 4.94 |
| PGSC0003DMT400090844 | Potato | cytosol | 2.02 | 4.17 |
| Solyc09g061360.1.1 | Tomato | nucleus | 1.62 | 3.85 |
| Solyc06g054210.1.1 | Tomato | nucleus | 2.02 | 3.79 |
| Solyc06g054190.1.1 | Tomato | cytosol | 2.02 | 3.79 |
| Solyc06g054170.1.1 | Tomato | cytosol | 2.02 | 3.79 |
| Solyc09g082130.2.1 | Tomato | nucleus | 6.07 | 3.62 |
| Solyc10g018690.1.1 | Tomato | cytosol | 1.21 | 3.53 |
| Solyc09g061490.1.1 | Tomato | nucleus | 1.62 | 3.03 |
Protein Annotations
| EnsemblPlants:Solyc06g054180.1.1 | EnsemblPlantsGene:Solyc06g054180.1 | InterPro:Oberon_PHD | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | PFAM:PF07227 |
| UniParc:UPI0002765986 | UniProt:K4C6A5 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6:-:36988788..36989798
Molecular Weight (calculated)
27149.4 Da
IEP (calculated)
8.035
GRAVY (calculated)
0.081
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPLLSDSPF GVITCKAGNR ICSSLTAENP LTSTRFCDLC CSEHGFCGDC CCILCGKLIV LDYDGYSYIR CEATVVDGHI CGHVSHLECA LRSYMAGTVK
101: GSINLNAEYL CRYCDSRTDL VPHALKLLSI CTSVASYADI KKILNLGIRI LCHSQKSSAK ELLDRIKSIN AKLVKGVGIQ DALKRENCGN STVLPVVHKY
201: QKRLVQTKLQ YDKKIKLECL GKSMKEELCC MICITTLVCE TKEDGVG
101: GSINLNAEYL CRYCDSRTDL VPHALKLLSI CTSVASYADI KKILNLGIRI LCHSQKSSAK ELLDRIKSIN AKLVKGVGIQ DALKRENCGN STVLPVVHKY
201: QKRLVQTKLQ YDKKIKLECL GKSMKEELCC MICITTLVCE TKEDGVG
001: MDSMDIDQSN IGESPHLLLR PVGPRISGKG YFVDRYLYPP KYLPGLDTEI LRKNKVFRSR LSLQRYIRVH FPEADVQKFF ASFSWSIPCR DGQGVLPQKQ
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.