Factsheet for Solyc09g059860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g018690.1.1	Tomato	cytosol	53.09	50.59
Solyc09g061360.1.1	Tomato	nucleus	53.09	41.35
Solyc06g054170.1.1	Tomato	cytosol	59.26	36.36
Solyc06g054190.1.1	Tomato	cytosol	59.26	36.36
Solyc06g054210.1.1	Tomato	nucleus	51.85	31.82
Solyc09g061490.1.1	Tomato	nucleus	48.15	29.55
Solyc09g059740.1.1	Tomato	cytosol	59.26	17.2
Solyc09g061260.1.1	Tomato	cytosol	70.37	16.57
Solyc06g054230.2.1	Tomato	cytosol	62.96	15.55
Solyc09g059890.1.1	Tomato	cytosol	40.74	14.93
Solyc09g059910.1.1	Tomato	extracellular	38.27	11.74
Solyc09g060010.1.1	Tomato	extracellular	14.81	7.95
VIT_05s0020g03600.t01	Wine grape	cytosol	40.74	6.68
PGSC0003DMT400077587	Potato	nucleus	39.51	6.48
AT1G05410.1	Thale cress	cytosol	32.1	5.52
Bra015422.1-P	Field mustard	cytosol	28.4	4.9
CDY10107	Canola	cytosol	28.4	4.88
CDY47288	Canola	cytosol	28.4	4.88
KRH27646	Soybean	cytosol, nucleus	25.93	4.4
KRH77849	Soybean	nucleus	24.69	4.17
KRG99083	Soybean	nucleus	24.69	4.11
Solyc09g061540.1.1	Tomato	cytosol	3.7	2.59
Solyc09g061500.1.1	Tomato	cytosol	3.7	2.4
Solyc09g061370.1.1	Tomato	cytosol	4.94	2.06
Solyc06g054200.1.1	Tomato	cytosol	4.94	1.81
Solyc09g061560.1.1	Tomato	mitochondrion	3.7	1.79
Solyc09g061580.1.1	Tomato	cytosol	2.47	1.72
Solyc06g054180.1.1	Tomato	cytosol	4.94	1.62
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	4.94	1.59
Solyc09g082140.2.1	Tomato	cytosol, nucleus	3.7	0.91
Solyc09g060020.1.1	Tomato	cytosol	0.0	0.0
Solyc09g060060.1.1	Tomato	cytosol	0.0	0.0
Solyc09g059870.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061590.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061600.1.1	Tomato	cytosol	0.0	0.0
Solyc09g082130.2.1	Tomato	nucleus	0.0	0.0
Solyc09g059900.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g059860.1.1

EnsemblPlantsGene:Solyc09g059860.1

PANTHER:PTHR33345

UniParc:UPI000276B93A

UniProt:K4CTS0

MapMan:35.2

Description

No Description!

Coordinates

chr9:+:56277353..56277598

Molecular Weight (calculated)

9158.7 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.616

Length

81 amino acids

Sequence
(BLAST)

1: MFAKEKVGES RAHVVYNGSA SRISEVGLEI YPVYECDSGE GLPYTSVDFP NAGDKRGWRA RKSVSSSGTF RDRYFYLPKH F

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.