Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g061590.1.1 | Tomato | cytosol | 23.17 | 76.77 |
| Solyc09g060060.1.1 | Tomato | cytosol | 13.72 | 75.0 |
| Solyc06g054170.1.1 | Tomato | cytosol | 29.88 | 74.24 |
| Solyc06g054210.1.1 | Tomato | nucleus | 29.27 | 72.73 |
| Solyc06g054190.1.1 | Tomato | cytosol | 28.66 | 71.21 |
| Solyc09g060020.1.1 | Tomato | cytosol | 16.16 | 70.67 |
| Solyc09g061490.1.1 | Tomato | nucleus | 27.74 | 68.94 |
| Solyc09g061600.1.1 | Tomato | cytosol | 16.46 | 68.35 |
| Solyc09g059740.1.1 | Tomato | cytosol | 56.71 | 66.67 |
| Solyc09g061360.1.1 | Tomato | nucleus | 20.12 | 63.46 |
| Solyc09g061370.1.1 | Tomato | cytosol | 37.5 | 63.4 |
| Solyc09g059890.1.1 | Tomato | cytosol | 42.68 | 63.35 |
| Solyc06g054200.1.1 | Tomato | cytosol | 42.68 | 63.35 |
| Solyc09g059860.1.1 | Tomato | cytosol | 15.55 | 62.96 |
| Solyc09g061580.1.1 | Tomato | cytosol | 21.95 | 62.07 |
| Solyc09g061500.1.1 | Tomato | cytosol | 23.17 | 60.8 |
| Solyc09g059870.1.1 | Tomato | cytosol | 24.09 | 60.77 |
| Solyc09g061260.1.1 | Tomato | cytosol | 63.11 | 60.17 |
| Solyc09g061540.1.1 | Tomato | cytosol | 21.04 | 59.48 |
| Solyc09g059900.1.1 | Tomato | cytosol | 11.89 | 59.09 |
| Solyc09g061560.1.1 | Tomato | mitochondrion | 30.18 | 58.93 |
| Solyc06g054180.1.1 | Tomato | cytosol | 40.85 | 54.25 |
| Solyc10g018690.1.1 | Tomato | cytosol | 14.02 | 54.12 |
| Solyc06g054160.1.1 | Tomato | cytosol, peroxisome, plastid | 40.85 | 53.17 |
| Solyc09g059910.1.1 | Tomato | extracellular | 38.72 | 48.11 |
| Solyc09g060010.1.1 | Tomato | extracellular | 20.43 | 44.37 |
| Solyc09g082140.2.1 | Tomato | cytosol, nucleus | 34.15 | 33.84 |
| CDY47288 | Canola | cytosol | 45.73 | 31.85 |
| CDY10107 | Canola | cytosol | 45.73 | 31.85 |
| Bra015422.1-P | Field mustard | cytosol | 45.43 | 31.77 |
| AT1G05410.1 | Thale cress | cytosol | 45.43 | 31.63 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 46.95 | 31.17 |
| KRH77849 | Soybean | nucleus | 42.38 | 28.96 |
| KRH27646 | Soybean | cytosol, nucleus | 42.07 | 28.93 |
| KRG99083 | Soybean | nucleus | 42.38 | 28.54 |
| Solyc09g082130.2.1 | Tomato | nucleus | 11.28 | 8.94 |
Protein Annotations
| EnsemblPlants:Solyc06g054230.2.1 | EnsemblPlantsGene:Solyc06g054230.2 | InterPro:Oberon_PHD | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | PFAM:PF07227 |
| UniParc:UPI0002765B66 | UniProt:K4C6B0 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6:-:37048515..37049853
Molecular Weight (calculated)
36314.6 Da
IEP (calculated)
8.101
GRAVY (calculated)
-0.203
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKEEVEDS HAFVECNGSA SVINETRLRV YPVSEYDSGE GLPYAPVDWP NVGDKWGWRA GKKATGLGTF KDRYLYLPKR FQALKDGKKN VFRSKISVKK
101: YLQSEYPDMD INQFFASFSW MIPSRQSSSS KDMKERTSSS GTKMQPLLAD SPIRVITCKA GNKICSSLTA ESPFLETMLC NICCSEPGFC QDCCCILCFK
201: PISLDYDGYS SIRCEATTNG YICGHVSHVE CALRAYMAGT VGGSINLDAE YLCRCCDSRT DLVAHALKLL NICTSIASYA DIEKILNVGI CVLRGSQKRS
301: GKELLHRIES IKAKLTKGVR IQDAFVCG
101: YLQSEYPDMD INQFFASFSW MIPSRQSSSS KDMKERTSSS GTKMQPLLAD SPIRVITCKA GNKICSSLTA ESPFLETMLC NICCSEPGFC QDCCCILCFK
201: PISLDYDGYS SIRCEATTNG YICGHVSHVE CALRAYMAGT VGGSINLDAE YLCRCCDSRT DLVAHALKLL NICTSIASYA DIEKILNVGI CVLRGSQKRS
301: GKELLHRIES IKAKLTKGVR IQDAFVCG
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.