Factsheet for Solyc09g059870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060060.1.1	Tomato	cytosol	28.46	61.67
Solyc09g060020.1.1	Tomato	cytosol	33.08	57.33
Solyc09g061600.1.1	Tomato	cytosol	31.54	51.9
Solyc09g061590.1.1	Tomato	cytosol	35.38	46.46
Solyc09g059900.1.1	Tomato	cytosol	21.54	42.42
Solyc09g060010.1.1	Tomato	extracellular	37.69	32.45
Solyc09g059890.1.1	Tomato	cytosol	52.31	30.77
Solyc09g061370.1.1	Tomato	cytosol	43.85	29.38
Solyc09g061500.1.1	Tomato	cytosol	23.85	24.8
Solyc06g054230.2.1	Tomato	cytosol	60.77	24.09
Solyc09g061260.1.1	Tomato	cytosol	63.08	23.84
Solyc06g054200.1.1	Tomato	cytosol	39.23	23.08
Solyc09g059910.1.1	Tomato	extracellular	41.54	20.45
Solyc09g059740.1.1	Tomato	cytosol	43.08	20.07
Solyc06g054180.1.1	Tomato	cytosol	36.15	19.03
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	36.15	18.65
Solyc09g061560.1.1	Tomato	mitochondrion	23.08	17.86
Solyc06g054210.1.1	Tomato	nucleus	17.69	17.42
Solyc09g061490.1.1	Tomato	nucleus	17.69	17.42
Solyc06g054170.1.1	Tomato	cytosol	16.92	16.67
Solyc09g061540.1.1	Tomato	cytosol	14.62	16.38
Solyc09g061580.1.1	Tomato	cytosol	14.62	16.38
Solyc06g054190.1.1	Tomato	cytosol	16.15	15.91
Solyc09g082140.2.1	Tomato	cytosol, nucleus	34.62	13.6
KRH27646	Soybean	cytosol, nucleus	47.69	13.0
PGSC0003DMT400077587	Potato	nucleus	48.46	12.75
KRG99083	Soybean	nucleus	46.92	12.53
KRH77849	Soybean	nucleus	46.15	12.5
VIT_05s0020g03600.t01	Wine grape	cytosol	45.38	11.94
Bra015422.1-P	Field mustard	cytosol	43.08	11.94
CDY47288	Canola	cytosol	43.08	11.89
CDY10107	Canola	cytosol	43.08	11.89
AT1G05410.1	Thale cress	cytosol	37.69	10.4
Solyc09g082130.2.1	Tomato	nucleus	14.62	4.59
Solyc09g061360.1.1	Tomato	nucleus	2.31	2.88
Solyc09g059860.1.1	Tomato	cytosol	0.0	0.0
Solyc10g018690.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g059870.1.1	EnsemblPlantsGene:Solyc09g059870.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
UniParc:UPI000276B93B	UniProt:K4CTS1	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr9:+:56304552..56305311

Molecular Weight (calculated)

14822.0 Da

IEP (calculated)

5.091

GRAVY (calculated)

0.111

Length

130 amino acids

Sequence
(BLAST)

001: MAFRSNISVE KYLQSEYPDI DMNKFFASIS WMIPSMKLPS SKAMVWDICC SEVGFSRDCV IRDYMAGKAG ESINLDAQYL CLYCDSRMDL VSHAQMLINT
101: CTFISTFDYI ENIFNVGIFI LLGSQKRSGK

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.