Factsheet for Solyc09g082140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082107	Potato	cytosol	91.24	64.81
Solyc09g061590.1.1	Tomato	cytosol	18.73	62.63
Solyc09g060060.1.1	Tomato	cytosol	10.57	58.33
Solyc09g060020.1.1	Tomato	cytosol	12.08	53.33
Solyc09g061600.1.1	Tomato	cytosol	11.78	49.37
Solyc09g061370.1.1	Tomato	cytosol	28.4	48.45
Solyc09g061580.1.1	Tomato	cytosol	16.92	48.28
Solyc06g054200.1.1	Tomato	cytosol	32.02	47.96
Solyc09g061500.1.1	Tomato	cytosol	17.82	47.2
Solyc09g061540.1.1	Tomato	cytosol	16.31	46.55
Solyc09g061560.1.1	Tomato	mitochondrion	22.36	44.05
Solyc06g054180.1.1	Tomato	cytosol	32.63	43.72
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	32.02	42.06
Solyc09g059900.1.1	Tomato	cytosol	8.16	40.91
Solyc09g059870.1.1	Tomato	cytosol	13.6	34.62
Solyc06g054230.2.1	Tomato	cytosol	33.84	34.15
VIT_05s0020g03600.t01	Wine grape	cytosol	50.76	34.01
Bra015422.1-P	Field mustard	cytosol	47.13	33.26
CDY47288	Canola	cytosol	47.13	33.12
Solyc09g059910.1.1	Tomato	extracellular	25.98	32.58
Solyc09g061260.1.1	Tomato	cytosol	33.84	32.56
CDY10107	Canola	cytosol	46.22	32.48
KRH77849	Soybean	nucleus	45.92	31.67
AT1G05410.1	Thale cress	cytosol	45.02	31.63
KRH27646	Soybean	cytosol, nucleus	45.32	31.45
KRG99083	Soybean	nucleus	45.92	31.21
Solyc09g059890.1.1	Tomato	cytosol	19.64	29.41
Solyc09g059740.1.1	Tomato	cytosol	23.57	27.96
Solyc09g060010.1.1	Tomato	extracellular	9.06	19.87
Solyc09g082130.2.1	Tomato	nucleus	9.37	7.49
Solyc10g018690.1.1	Tomato	cytosol	1.21	4.71
Solyc09g059860.1.1	Tomato	cytosol	0.91	3.7
Solyc06g054170.1.1	Tomato	cytosol	1.21	3.03
Solyc09g061490.1.1	Tomato	nucleus	1.21	3.03
Solyc06g054190.1.1	Tomato	cytosol	1.21	3.03
Solyc06g054210.1.1	Tomato	nucleus	1.21	3.03
Solyc09g061360.1.1	Tomato	nucleus	0.91	2.88

Protein Annotations

EnsemblPlants:Solyc09g082140.2.1	EnsemblPlantsGene:Solyc09g082140.2	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
UniParc:UPI000276BF62	UniProt:K4CVJ1	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr9:+:67970115..67974437

Molecular Weight (calculated)

36932.4 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.288

Length

331 amino acids

Sequence
(BLAST)

001: MKSDSHLGTI TCKAGNSLCA SASLIEAGNP SPETMICDIC CSEPSFCRDC CCILCCKTIS SAYGGYSYIR CEAKADDGYI CGHIAHIDCA LRAYMAGTVG
101: GSVGLDAEYC CRRCDSRTEL VSHVMKLLKI CGSIDSRDDV EKILNVGFCI IRGSRRTNAK QLLRHIKSAM AKLQKGACIG DVFKEVEFLN ANGGTPHHEE
201: SILHKRSSPL KMTSNFDYRV ESLKLEDEID QTLQALRKSQ NFEYRLAEER LLVQKNYIMN LYEQLDKERS DLSSHTTMVE TDTFVDAVIR RVDQIKREVL
301: KLKDMKQVQN GFGSTSKTIL KDYFGLEAES S

Best Arabidopsis Sequence Match ( AT1G05410.2 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVGPRISGKG YFVDRYLYPP KYLPGLDTEI LRKNKVFRSR LSLQRYIRVH FPEADVQKFF ASFSWSIPCR DGQGVLPQKQ
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.