Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059456 | Potato | cytosol | 81.0 | 63.84 |
| Solyc06g054170.1.1 | Tomato | cytosol | 30.11 | 63.64 |
| Solyc06g054190.1.1 | Tomato | cytosol | 29.39 | 62.12 |
| Solyc09g061360.1.1 | Tomato | nucleus | 22.22 | 59.62 |
| Solyc09g059860.1.1 | Tomato | cytosol | 17.2 | 59.26 |
| Solyc06g054210.1.1 | Tomato | nucleus | 27.96 | 59.09 |
| Solyc09g061490.1.1 | Tomato | nucleus | 27.6 | 58.33 |
| Solyc06g054230.2.1 | Tomato | cytosol | 66.67 | 56.71 |
| Solyc09g061500.1.1 | Tomato | cytosol | 24.01 | 53.6 |
| Solyc09g061580.1.1 | Tomato | cytosol | 21.51 | 51.72 |
| Solyc09g061590.1.1 | Tomato | cytosol | 18.28 | 51.52 |
| Solyc09g059890.1.1 | Tomato | cytosol | 39.78 | 50.23 |
| Solyc09g061540.1.1 | Tomato | cytosol | 20.79 | 50.0 |
| Solyc09g061260.1.1 | Tomato | cytosol | 59.14 | 47.97 |
| Solyc10g018690.1.1 | Tomato | cytosol | 14.34 | 47.06 |
| Solyc09g060060.1.1 | Tomato | cytosol | 9.68 | 45.0 |
| Solyc09g060020.1.1 | Tomato | cytosol | 11.83 | 44.0 |
| Solyc09g059910.1.1 | Tomato | extracellular | 41.58 | 43.94 |
| Solyc09g059870.1.1 | Tomato | cytosol | 20.07 | 43.08 |
| Solyc09g061370.1.1 | Tomato | cytosol | 29.03 | 41.75 |
| Solyc06g054200.1.1 | Tomato | cytosol | 31.18 | 39.37 |
| Solyc09g061600.1.1 | Tomato | cytosol | 10.39 | 36.71 |
| Solyc06g054180.1.1 | Tomato | cytosol | 30.11 | 34.01 |
| Solyc09g061560.1.1 | Tomato | mitochondrion | 20.43 | 33.93 |
| Solyc06g054160.1.1 | Tomato | cytosol, peroxisome, plastid | 30.47 | 33.73 |
| Solyc09g060010.1.1 | Tomato | extracellular | 17.56 | 32.45 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 44.09 | 24.9 |
| CDY10107 | Canola | cytosol | 41.22 | 24.42 |
| Bra015422.1-P | Field mustard | cytosol | 40.86 | 24.31 |
| CDY47288 | Canola | cytosol | 40.86 | 24.2 |
| AT1G05410.1 | Thale cress | cytosol | 39.78 | 23.57 |
| Solyc09g082140.2.1 | Tomato | cytosol, nucleus | 27.96 | 23.57 |
| KRH77849 | Soybean | nucleus | 39.43 | 22.92 |
| KRH27646 | Soybean | cytosol, nucleus | 38.71 | 22.64 |
| KRG99083 | Soybean | nucleus | 39.07 | 22.38 |
| Solyc09g059900.1.1 | Tomato | cytosol | 3.58 | 15.15 |
| Solyc09g082130.2.1 | Tomato | nucleus | 9.32 | 6.28 |
Protein Annotations
| EnsemblPlants:Solyc09g059740.1.1 | EnsemblPlantsGene:Solyc09g059740.1 | InterPro:Oberon_PHD | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | PFAM:PF07227 |
| UniParc:UPI000276B92E | UniProt:K4CTQ8 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr9:-:55261445..55262502
Molecular Weight (calculated)
31257.9 Da
IEP (calculated)
7.154
GRAVY (calculated)
-0.322
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSANEEIGE SHARIVCNGS STRINDIGLQ LYPVSNYDSS EGLPYAPVDW PNVGDKWGWR VGNRVTSSGT FIDRYLYLPK NSKAPNGGNE STFQSKISVK
101: KYPEFQYPDM DTNQFFASFS WMIRSKQSPS SKDIDFDSDM KERRTTSSGT KLQPLLSDSP IRVITCKAGN RICSSLTTAN SFLSRSCDIY CSDPSFCRDC
201: CCILCCKTIS SDYDVNNYIR CESIVDGYIC GHVSHLDCVL RAYMAGTVGG SINLDAQYLC RYCYSRMDLV PHVLKLLNI
101: KYPEFQYPDM DTNQFFASFS WMIRSKQSPS SKDIDFDSDM KERRTTSSGT KLQPLLSDSP IRVITCKAGN RICSSLTTAN SFLSRSCDIY CSDPSFCRDC
201: CCILCCKTIS SDYDVNNYIR CESIVDGYIC GHVSHLDCVL RAYMAGTVGG SINLDAQYLC RYCYSRMDLV PHVLKLLNI
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.