Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47288 | Canola | cytosol | 74.52 | 74.52 |
| CDY10107 | Canola | cytosol | 74.31 | 74.31 |
| Bra015422.1-P | Field mustard | cytosol | 73.89 | 74.2 |
| PGSC0003DMT400041923 | Potato | cytosol | 18.68 | 57.52 |
| PGSC0003DMT400017291 | Potato | cytosol, peroxisome, plastid | 20.59 | 56.07 |
| Solyc09g061590.1.1 | Tomato | cytosol | 11.46 | 54.55 |
| Solyc09g060020.1.1 | Tomato | cytosol | 7.43 | 46.67 |
| Solyc06g054230.2.1 | Tomato | cytosol | 31.63 | 45.43 |
| Solyc09g082140.2.1 | Tomato | cytosol, nucleus | 31.63 | 45.02 |
| Solyc09g060060.1.1 | Tomato | cytosol | 5.73 | 45.0 |
| PGSC0003DMT400082107 | Potato | cytosol | 44.37 | 44.85 |
| Solyc09g061370.1.1 | Tomato | cytosol | 18.47 | 44.85 |
| Solyc06g054200.1.1 | Tomato | cytosol | 20.81 | 44.34 |
| PGSC0003DMT400092399 | Potato | cytosol | 22.08 | 44.26 |
| Solyc09g061560.1.1 | Tomato | mitochondrion | 15.71 | 44.05 |
| Solyc09g061600.1.1 | Tomato | cytosol | 7.22 | 43.04 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 45.22 | 42.77 |
| KRH77849 | Soybean | nucleus | 43.52 | 42.71 |
| Solyc09g059900.1.1 | Tomato | cytosol | 5.94 | 42.42 |
| Solyc09g061500.1.1 | Tomato | cytosol | 11.25 | 42.4 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 44.37 | 42.31 |
| KRH27646 | Soybean | cytosol, nucleus | 42.68 | 42.14 |
| KRG99083 | Soybean | nucleus | 43.31 | 41.89 |
| PGSC0003DMT400059456 | Potato | cytosol | 31.42 | 41.81 |
| Solyc09g061260.1.1 | Tomato | cytosol | 30.15 | 41.28 |
| PGSC0003DMT400077585 | Potato | cytosol | 16.99 | 41.24 |
| Solyc09g059890.1.1 | Tomato | cytosol | 18.9 | 40.27 |
| Solyc06g054180.1.1 | Tomato | cytosol | 21.02 | 40.08 |
| Solyc09g059740.1.1 | Tomato | cytosol | 23.57 | 39.78 |
| Solyc06g054170.1.1 | Tomato | cytosol | 11.04 | 39.39 |
| Solyc06g054160.1.1 | Tomato | cytosol, peroxisome, plastid | 20.81 | 38.89 |
| Solyc06g054190.1.1 | Tomato | cytosol | 10.83 | 38.64 |
| Solyc09g061490.1.1 | Tomato | nucleus | 10.62 | 37.88 |
| Solyc09g059870.1.1 | Tomato | cytosol | 10.4 | 37.69 |
| Solyc06g054210.1.1 | Tomato | nucleus | 10.4 | 37.12 |
| Os03t0747200-01 | Rice | cytosol | 35.24 | 36.73 |
| PGSC0003DMT400077583 | Potato | nucleus | 31.21 | 36.21 |
| PGSC0003DMT400090844 | Potato | cytosol | 9.13 | 35.83 |
| Solyc09g061360.1.1 | Tomato | nucleus | 7.86 | 35.58 |
| Solyc09g059910.1.1 | Tomato | extracellular | 18.9 | 33.71 |
| Solyc09g059860.1.1 | Tomato | cytosol | 5.52 | 32.1 |
| Solyc10g018690.1.1 | Tomato | cytosol | 5.52 | 30.59 |
| Solyc09g060010.1.1 | Tomato | extracellular | 9.13 | 28.48 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 39.07 | 26.36 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 38.85 | 26.22 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 38.22 | 25.79 |
| EER90880 | Sorghum | cytosol | 37.58 | 25.76 |
| Zm00001d034000_P002 | Maize | cytosol | 37.16 | 25.29 |
| HORVU5Hr1G094660.1 | Barley | plastid | 22.72 | 23.67 |
| PGSC0003DMT400077587 | Potato | nucleus | 18.9 | 18.02 |
| AT4G14840.1 | Thale cress | nucleus | 15.29 | 12.97 |
| AT3G22520.1 | Thale cress | nucleus | 15.71 | 12.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837042 | ProteinID:AEE27836.1 | ArrayExpress:AT1G05410 | EnsemblPlantsGene:AT1G05410 | RefSeq:AT1G05410 |
| TAIR:AT1G05410 | RefSeq:AT1G05410-TAIR-G | EnsemblPlants:AT1G05410.1 | TAIR:AT1G05410.1 | EMBL:AY065014 | EMBL:AY074502 |
| EMBL:AY096601 | EMBL:AY142043 | ncoils:Coil | GO:GO:0003674 | GO:GO:0008150 | RefSeq:NP_563738.1 |
| InterPro:Oberon_PHD | PFAM:PF07227 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | UniProt:Q8VZE5 | UniParc:UPI00000AB232 |
| SEG:seg | : | : | : | : | : |
Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
Coordinates
chr1:-:1585371..1587794
Molecular Weight (calculated)
53371.7 Da
IEP (calculated)
5.124
GRAVY (calculated)
-0.469
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.