CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99437
EES06098
KXG38100
OQU82869

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	EER99437	AT4G21990.1	21798944
AT1G05410.1	KXG38100	AT5G49210.1	21798944
AT1G05410.1	OQU82869	AT5G49210.1	21798944
AT1G05410.1	EES06098	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034000_P002	Maize	cytosol	84.42	83.81
Os03t0747200-01	Rice	cytosol	41.05	62.39
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	57.64	56.73
TraesCS5B01G390300.3	Wheat	cytosol	57.5	56.59
TraesCS5A01G385300.3	Wheat	cytosol	57.35	56.45
PGSC0003DMT400041923	Potato	cytosol	10.48	47.06
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	11.35	45.09
GSMUA_Achr7P27170_001	Banana	cytosol	31.59	43.57
PGSC0003DMT400082107	Potato	cytosol	27.8	40.99
Solyc09g061580.1.1	Tomato	cytosol	6.7	39.66
HORVU5Hr1G094660.1	Barley	plastid	25.76	39.16
PGSC0003DMT400092399	Potato	cytosol	13.1	38.3
Solyc09g061540.1.1	Tomato	cytosol	6.4	37.93
AT1G05410.1	Thale cress	cytosol	25.76	37.58
VIT_05s0020g03600.t01	Wine grape	cytosol	26.78	37.25
CDY10107	Canola	cytosol	24.89	36.31
CDY47288	Canola	cytosol	24.75	36.09
Bra015422.1-P	Field mustard	cytosol	24.6	36.03
KRH77849	Soybean	nucleus	24.75	35.42
KRG99083	Soybean	nucleus	25.04	35.32
KRH27646	Soybean	cytosol, nucleus	24.45	35.22
PGSC0003DMT400077585	Potato	cytosol	9.61	34.02
PGSC0003DMT400059456	Potato	cytosol	17.47	33.9
PGSC0003DMT400077583	Potato	nucleus	18.49	31.28
PGSC0003DMT400090844	Potato	cytosol	5.39	30.83
PGSC0003DMT400077587	Potato	nucleus	11.94	16.6
KRH76186	Soybean	nucleus	10.04	15.13
KRH76190	Soybean	nucleus	10.04	15.13
CDY10650	Canola	nucleus	12.81	15.12
PGSC0003DMT400082110	Potato	nucleus	10.77	14.95
Bra039958.1-P	Field mustard	nucleus	12.81	14.81
CDY34248	Canola	nucleus	12.66	14.72
Bra023822.1-P	Field mustard	nucleus	12.52	14.58
CDX98211	Canola	nucleus	12.37	14.46
CDY10289	Canola	nucleus	12.37	14.36
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.5	14.18
CDY06487	Canola	nucleus	10.92	13.91
CDY24312	Canola	nucleus	11.5	13.88
AT4G14840.1	Thale cress	nucleus	11.21	13.87
Bra037070.1-P	Field mustard	nucleus	10.48	13.82
CDY08296	Canola	nucleus	10.48	13.82
CDX92945	Canola	nucleus	11.35	13.76
AT3G22520.1	Thale cress	nucleus	11.79	13.5
KRH33505	Soybean	nucleus	11.21	13.39
CDY38302	Canola	nucleus	13.25	13.21
VIT_05s0020g03590.t01	Wine grape	nucleus	10.33	13.2
KRG90260	Soybean	nucleus	8.88	12.98
KRH65951	Soybean	plastid	6.4	12.75
VIT_17s0000g05270.t01	Wine grape	nucleus	7.86	12.5
VIT_12s0035g02120.t01	Wine grape	nucleus	6.11	9.48

Protein Annotations

EnsemblPlants:EER90880	EnsemblPlantsGene:SORBI_3001G091400	EntrezGene:8085943	InterPro:Myb/SANT-like_dom	InterPro:Oberon_PHD	ncoils:Coil
PANTHER:PTHR31704	PANTHER:PTHR31704:SF65	PFAM:PF07227	PFAM:PF12776	ProteinID:EER90880	ProteinID:EER90880.1
RefSeq:XP_002463882.1	unigene:Sbi.10692	UniParc:UPI0001A82353	UniProt:C5X160	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:7080112..7086656

Molecular Weight (calculated)

77542.4 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.536

Length

687 amino acids

Sequence
(BLAST)

001: MSPNKPSHAS GRDAVFWSQG MNAYLIDRLL YHQDNGNRGE SKFSSVAYDS IINGVGDKFG VTIDRNNIKN RLKYIKESFH ECRNLLGEDS RFKWCSETRK
101: FKADPNVWRE LIQRKPEAKK WMMKTIDHYD RLMLLFGKDR EKRPDVENSK GTAKKKARTE PPKGRLHRTP LNGNESAVDE SLDKKVDKIE IPDASITNLE
201: LDLSELCRTD NGIVAIPVRA NSYGKGLPYA PENWPHSGDI WHWKVGSRSS GAGHWADRYL MPPSRFRDAT PKKLRFASRV QVEEFVKREF PDVDPSTFFS
301: MFIWRIPAEG YRIQKGTQQV WHNEPEPVVA DPGGLCKARN SLCNLEREGF VESSPARACN ICCKEPGFCR ECCCLLCNKT IDYSFGGYSF IKCEAVVEEN
401: LICGHSAHLN CALRSYMAGT VGGVFALDVQ YLCRLCDNKI NLMTHVEKLM ETCQSLESRD EIEPMLNLGL CLLRGSKQMR ARSLENQMRS AMEKLECGFD
501: LAEVWKFEGD EGRATLSAGE NSPPTSGVTV LGAHQVPETG ALTGHPDLID PLGDNDFETD IENLPVFITG DQNVASAKFE DEIDLALEEL KKSQEMEYNL
601: AEQKLYAQKD RILCLYRELD TERAQLADPM PLSDASNYGA MLANVLRLVD QIKRDEEKFK SMLKVAGGFA KAPPNVIKEL FGLPADK

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.