Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92945 | Canola | nucleus | 82.95 | 83.25 |
| CDX98211 | Canola | nucleus | 77.5 | 75.0 |
| CDY34248 | Canola | nucleus | 75.92 | 73.1 |
| AT3G22520.1 | Thale cress | nucleus | 74.17 | 70.33 |
| CDY10650 | Canola | nucleus | 71.7 | 70.1 |
| CDY10289 | Canola | nucleus | 72.76 | 69.93 |
| CDY08296 | Canola | nucleus | 57.47 | 62.76 |
| CDY06487 | Canola | nucleus | 58.52 | 61.78 |
| CDY38302 | Canola | nucleus | 71.0 | 58.64 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 30.05 | 31.78 |
| KRH76190 | Soybean | nucleus | 24.6 | 30.7 |
| KRH76186 | Soybean | nucleus | 24.6 | 30.7 |
| KRG90260 | Soybean | nucleus | 24.43 | 29.57 |
| PGSC0003DMT400082110 | Potato | nucleus | 25.48 | 29.29 |
| Solyc09g082130.2.1 | Tomato | nucleus | 20.91 | 28.74 |
| KRH65951 | Soybean | plastid | 17.22 | 28.41 |
| KRH33505 | Soybean | nucleus | 25.48 | 25.22 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 16.52 | 21.22 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 13.53 | 15.46 |
| CDY47288 | Canola | cytosol | 12.13 | 14.65 |
| CDY10107 | Canola | cytosol | 11.95 | 14.44 |
| HORVU5Hr1G094660.1 | Barley | plastid | 11.42 | 14.38 |
| Os03t0747200-01 | Rice | cytosol | 11.42 | 14.38 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 14.94 | 12.18 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 14.76 | 12.03 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 14.76 | 12.03 |
| Zm00001d034000_P002 | Maize | cytosol | 14.41 | 11.85 |
| EER90880 | Sorghum | cytosol | 13.88 | 11.5 |
Protein Annotations
| EnsemblPlants:CDY24312 | EnsemblPlantsGene:GSBRNA2T00026505001 | ncoils:Coil | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | ProteinID:CDY24312 |
| ProteinID:CDY24312.1 | SEG:seg | UniParc:UPI0004EE3A3A | UniProt:A0A078GGL3 | MapMan:35.2 | : |
Description
BnaC03g42850DBnaC03g42850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGL3]
Coordinates
chrLK032156:+:552145..554462
Molecular Weight (calculated)
64104.0 Da
IEP (calculated)
6.294
GRAVY (calculated)
-0.822
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPFYSPID MQQGISHTPP GFDSEPVPIS TYRDTEPVPL STYRENDNFW ENGFNREQQT IEEPEPKENG KRSVDKSSFT HGETDLNQLP AIPPASTGQG
101: LPYAPVDWPS FGDVWTWRVG KRVTATGYHH DRFLILPQRL QQKNVPKSFA SKQTLLRYFQ SNFPGMDADA FFASFSWKVP ALFQPANKVD AASLFEETPK
201: EVKTEGNSRY SQRKRTPMPT QTNESVEANA KATQRGGSSS NKKKKGGATG PKSSRQSTRR ASNQQRGGAV DLNHLNEEEG EPTTGPNTSG RRKKRRVNLK
301: EEEEEEEEDV SIPHIYVSPM NGVLAVSHEP VDVDPVEFDS YLNSLDSLLH QGPEDASVLV TASSPMREYE WAEARMNISS LLEKDFPTLF TSKNAGEIAA
401: LATKLRKDPN LSAEEMVRLK LMGEIPTFSE VFQENKAVIE DANRFFSALE LNKAKVASLK YEYSDLRHKL GSIQMEVDEK SEGIRRIDDQ IAQLQARRNE
501: LKRCIGSKEK EKVDLSYGQK MVANSIPKVV QDVQGANSKK PEWECKKENA LKREEEILSK FTPLRGFFL
101: LPYAPVDWPS FGDVWTWRVG KRVTATGYHH DRFLILPQRL QQKNVPKSFA SKQTLLRYFQ SNFPGMDADA FFASFSWKVP ALFQPANKVD AASLFEETPK
201: EVKTEGNSRY SQRKRTPMPT QTNESVEANA KATQRGGSSS NKKKKGGATG PKSSRQSTRR ASNQQRGGAV DLNHLNEEEG EPTTGPNTSG RRKKRRVNLK
301: EEEEEEEEDV SIPHIYVSPM NGVLAVSHEP VDVDPVEFDS YLNSLDSLLH QGPEDASVLV TASSPMREYE WAEARMNISS LLEKDFPTLF TSKNAGEIAA
401: LATKLRKDPN LSAEEMVRLK LMGEIPTFSE VFQENKAVIE DANRFFSALE LNKAKVASLK YEYSDLRHKL GSIQMEVDEK SEGIRRIDDQ IAQLQARRNE
501: LKRCIGSKEK EKVDLSYGQK MVANSIPKVV QDVQGANSKK PEWECKKENA LKREEEILSK FTPLRGFFL
001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
Arabidopsis Description
Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.