Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24312 | Canola | nucleus | 70.33 | 74.17 |
| CDX98211 | Canola | nucleus | 72.33 | 73.81 |
| CDY10289 | Canola | nucleus | 71.83 | 72.8 |
| Bra039958.1-P | Field mustard | nucleus | 71.83 | 72.56 |
| CDY10650 | Canola | nucleus | 69.83 | 71.99 |
| CDY34248 | Canola | nucleus | 69.5 | 70.56 |
| Bra023822.1-P | Field mustard | nucleus | 69.17 | 70.34 |
| Bra001870.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 64.67 | 69.66 |
| CDX92945 | Canola | nucleus | 65.0 | 68.78 |
| CDY38302 | Canola | nucleus | 71.67 | 62.41 |
| AT4G14840.1 | Thale cress | nucleus | 54.5 | 58.92 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 29.67 | 33.09 |
| KRH76186 | Soybean | nucleus | 24.0 | 31.58 |
| KRH76190 | Soybean | nucleus | 24.0 | 31.58 |
| KRG90260 | Soybean | nucleus | 24.0 | 30.64 |
| PGSC0003DMT400082110 | Potato | nucleus | 25.17 | 30.51 |
| KRH65951 | Soybean | plastid | 16.67 | 28.99 |
| Solyc09g082130.2.1 | Tomato | nucleus | 19.33 | 28.02 |
| KRH33505 | Soybean | nucleus | 24.67 | 25.74 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 16.33 | 22.12 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 13.67 | 16.47 |
| AT1G05410.1 | Thale cress | cytosol | 12.33 | 15.71 |
| HORVU5Hr1G094660.1 | Barley | plastid | 10.5 | 13.94 |
| Os03t0747200-01 | Rice | cytosol | 10.5 | 13.94 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 15.5 | 13.32 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 15.0 | 12.89 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 15.0 | 12.89 |
| Zm00001d034000_P002 | Maize | cytosol | 14.33 | 12.43 |
| EER90880 | Sorghum | cytosol | 13.5 | 11.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821823 | ProteinID:AEE76649.1 | ArrayExpress:AT3G22520 | EnsemblPlantsGene:AT3G22520 | RefSeq:AT3G22520 |
| TAIR:AT3G22520 | RefSeq:AT3G22520-TAIR-G | EnsemblPlants:AT3G22520.1 | TAIR:AT3G22520.1 | EMBL:AY064003 | EMBL:AY091444 |
| ProteinID:BAB01467.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 | RefSeq:NP_188891.1 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | UniProt:Q9LJ94 | UniParc:UPI00000A09C0 |
| SEG:seg | : | : | : | : | : |
Description
Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
Coordinates
chr3:+:7974720..7978648
Molecular Weight (calculated)
67574.1 Da
IEP (calculated)
5.048
GRAVY (calculated)
-0.811
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.