Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08296 | Canola | nucleus | 67.39 | 71.78 |
| CDY06487 | Canola | nucleus | 69.55 | 71.61 |
| Bra037070.1-P | Field mustard | nucleus | 67.03 | 71.4 |
| AT3G22520.1 | Thale cress | nucleus | 58.92 | 54.5 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 31.53 | 32.53 |
| KRG90260 | Soybean | nucleus | 26.31 | 31.06 |
| KRH76186 | Soybean | nucleus | 25.05 | 30.48 |
| KRH76190 | Soybean | nucleus | 25.05 | 30.48 |
| PGSC0003DMT400082110 | Potato | nucleus | 25.95 | 29.09 |
| KRH65951 | Soybean | plastid | 16.4 | 26.38 |
| Solyc09g082130.2.1 | Tomato | nucleus | 19.64 | 26.33 |
| KRH33505 | Soybean | nucleus | 26.49 | 25.57 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 16.76 | 20.99 |
| AT1G05410.1 | Thale cress | cytosol | 12.97 | 15.29 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 13.15 | 14.66 |
| Os03t0747200-01 | Rice | cytosol | 10.81 | 13.27 |
| HORVU5Hr1G094660.1 | Barley | plastid | 10.63 | 13.05 |
| Zm00001d034000_P002 | Maize | cytosol | 14.77 | 11.85 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 14.41 | 11.46 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 14.23 | 11.32 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 14.23 | 11.32 |
| EER90880 | Sorghum | cytosol | 13.87 | 11.21 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827141 | ProteinID:AEE83508.1 | ProteinID:ANM68109.1 | ProteinID:ANM68110.1 | ArrayExpress:AT4G14840 |
| EnsemblPlantsGene:AT4G14840 | RefSeq:AT4G14840 | TAIR:AT4G14840 | RefSeq:AT4G14840-TAIR-G | EnsemblPlants:AT4G14840.1 | TAIR:AT4G14840.1 |
| Unigene:At.33234 | EMBL:BT011686 | EMBL:BT012624 | ProteinID:CAB10263.1 | ProteinID:CAB78526.1 | ncoils:Coil |
| RefSeq:NP_001329887.1 | RefSeq:NP_001329888.1 | RefSeq:NP_193220.1 | UniProt:O23339 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | UniParc:UPI00000A7CE3 |
| SEG:seg | : | : | : | : | : |
Description
At4g14840 [Source:UniProtKB/TrEMBL;Acc:O23339]
Coordinates
chr4:-:8511487..8513727
Molecular Weight (calculated)
62515.8 Da
IEP (calculated)
4.937
GRAVY (calculated)
-0.822
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMDQEIGQN SPGFDGESVV SMSNRSKETE PVPVENDYYR ENGFNSDGDG DDVKVNGDRS SFTDLNQLPA IPPASSGQGL PFAPVDFPSP GDVWTWRVGR
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.