Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 47.4 | 57.56 |
| PGSC0003DMT400082110 | Potato | nucleus | 33.09 | 35.96 |
| CDY08296 | Canola | nucleus | 33.83 | 34.93 |
| Bra037070.1-P | Field mustard | nucleus | 33.64 | 34.74 |
| Solyc09g082130.2.1 | Tomato | nucleus | 25.28 | 32.85 |
| CDY06487 | Canola | nucleus | 32.53 | 32.47 |
| AT4G14840.1 | Thale cress | nucleus | 32.53 | 31.53 |
| Bra001870.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.78 | 30.7 |
| CDY24312 | Canola | nucleus | 31.78 | 30.05 |
| CDY10650 | Canola | nucleus | 32.34 | 29.9 |
| AT3G22520.1 | Thale cress | nucleus | 33.09 | 29.67 |
| Bra023822.1-P | Field mustard | nucleus | 32.53 | 29.66 |
| CDY10289 | Canola | nucleus | 32.53 | 29.56 |
| CDX92945 | Canola | nucleus | 31.04 | 29.45 |
| CDY34248 | Canola | nucleus | 32.34 | 29.44 |
| CDX98211 | Canola | nucleus | 32.16 | 29.42 |
| Bra039958.1-P | Field mustard | nucleus | 31.78 | 28.79 |
| CDY38302 | Canola | nucleus | 32.34 | 25.25 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 18.96 | 20.65 |
| VIT_17s0000g05270.t01 | Wine grape | nucleus | 15.61 | 19.44 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 15.43 | 16.67 |
| HORVU5Hr1G094660.1 | Barley | plastid | 11.71 | 13.94 |
| Os03t0747200-01 | Rice | cytosol | 10.04 | 11.95 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 13.94 | 10.74 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 13.94 | 10.74 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 13.94 | 10.74 |
| Zm00001d034000_P002 | Maize | cytosol | 13.75 | 10.69 |
| EER90880 | Sorghum | cytosol | 13.2 | 10.33 |
Protein Annotations
| ArrayExpress:VIT_05s0020g03590 | EMBL:FN595749 | EnsemblPlants:VIT_05s0020g03590.t01 | EnsemblPlantsGene:VIT_05s0020g03590 | EntrezGene:100257987 | EntrezGene:LOC100257987 |
| ncoils:Coil | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | ProteinID:CCB50431 | ProteinID:CCB50431.1 | RefSeq:XP_002278693 |
| RefSeq:XP_002278693.1 | unigene:Vvi.15924 | UniParc:UPI000210A3FD | UniProt:F6HDR0 | wikigene:100257987 | wikigene:LOC100257987 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:5310953..5317067
Molecular Weight (calculated)
60237.2 Da
IEP (calculated)
5.646
GRAVY (calculated)
-0.562
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKNTVNPED GLCVRNLEDE VPLGSLSPID RYSTPPSISS QQKNESMEAD IPNETNGFTS GIKKNDLDIC PVSPLASGEG LPYAPVDWPN PGDTWSWKVG
101: RRVNKSGFYQ DRYLFLPRRL QNSSHRRESF SSKLSLKRYV QKQDPNINIA AFFGSFSWRV PPKRVTPSSI TLEVCPQPGK EVDQEVGKKS PFTLPRRKRR
201: AAKLPVTTIY KRHTRQSTKW FTRFNADDTG IIDLCSLSKE SETSDPTNQD LRSTTDFECD QVSSHQVPIS PAGSFVACCN SPVSCGVPHT ELTQGSEDKV
301: IPEDFDNFVD SLDDMLAQPL PEAPLSPPAT DNYQAFEDEI AEARIKLSSL LAMDFHLLVS SKDLKELVLL SSKLQKDPSL NADQLSKLKL IEEIPVTGKD
401: YLETMQIIEE VNKFFADLTS SMDKATSLRN EYNASKEDIA MLQVDINSSL STLEEIDDQI AKLQSRRAEL SNALKIKNKE VAKLISTQRT VADSLPKVVH
501: EVQLANSKKL EWEQKKKNAL KREAEILAKI APLRGFSL
101: RRVNKSGFYQ DRYLFLPRRL QNSSHRRESF SSKLSLKRYV QKQDPNINIA AFFGSFSWRV PPKRVTPSSI TLEVCPQPGK EVDQEVGKKS PFTLPRRKRR
201: AAKLPVTTIY KRHTRQSTKW FTRFNADDTG IIDLCSLSKE SETSDPTNQD LRSTTDFECD QVSSHQVPIS PAGSFVACCN SPVSCGVPHT ELTQGSEDKV
301: IPEDFDNFVD SLDDMLAQPL PEAPLSPPAT DNYQAFEDEI AEARIKLSSL LAMDFHLLVS SKDLKELVLL SSKLQKDPSL NADQLSKLKL IEEIPVTGKD
401: YLETMQIIEE VNKFFADLTS SMDKATSLRN EYNASKEDIA MLQVDINSSL STLEEIDDQI AKLQSRRAEL SNALKIKNKE VAKLISTQRT VADSLPKVVH
501: EVQLANSKKL EWEQKKKNAL KREAEILAKI APLRGFSL
001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
Arabidopsis Description
Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.