Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34248 | Canola | nucleus | 93.54 | 93.06 |
| Bra023822.1-P | Field mustard | nucleus | 92.18 | 91.86 |
| CDY24312 | Canola | nucleus | 75.0 | 77.5 |
| CDY10650 | Canola | nucleus | 76.53 | 77.32 |
| CDY10289 | Canola | nucleus | 77.72 | 77.2 |
| CDX92945 | Canola | nucleus | 73.81 | 76.54 |
| AT3G22520.1 | Thale cress | nucleus | 73.81 | 72.33 |
| CDY08296 | Canola | nucleus | 57.31 | 64.68 |
| CDY06487 | Canola | nucleus | 59.18 | 64.56 |
| CDY38302 | Canola | nucleus | 75.51 | 64.44 |
| KRH76190 | Soybean | nucleus | 25.0 | 32.24 |
| KRH76186 | Soybean | nucleus | 25.0 | 32.24 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 29.42 | 32.16 |
| PGSC0003DMT400082110 | Potato | nucleus | 26.36 | 31.31 |
| Solyc09g082130.2.1 | Tomato | nucleus | 21.6 | 30.68 |
| KRG90260 | Soybean | nucleus | 24.15 | 30.21 |
| KRH65951 | Soybean | plastid | 16.67 | 28.41 |
| KRH33505 | Soybean | nucleus | 25.51 | 26.09 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 16.33 | 21.67 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 13.44 | 15.86 |
| CDY47288 | Canola | cytosol | 12.24 | 15.29 |
| CDY10107 | Canola | cytosol | 12.07 | 15.07 |
| HORVU5Hr1G094660.1 | Barley | plastid | 11.05 | 14.38 |
| Os03t0747200-01 | Rice | cytosol | 11.05 | 14.38 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 15.31 | 12.89 |
| Zm00001d034000_P002 | Maize | cytosol | 14.97 | 12.72 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 14.97 | 12.61 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 14.8 | 12.46 |
| EER90880 | Sorghum | cytosol | 14.46 | 12.37 |
Protein Annotations
| EnsemblPlants:CDX98211 | EnsemblPlantsGene:GSBRNA2T00105680001 | ncoils:Coil | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | ProteinID:CDX98211 |
| ProteinID:CDX98211.1 | SEG:seg | UniParc:UPI0004EE7CC0 | MapMan:35.2 | : | : |
Description
BnaC07g08870D
Coordinates
chrLK031903:+:815772..818483
Molecular Weight (calculated)
65813.1 Da
IEP (calculated)
5.100
GRAVY (calculated)
-0.780
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPFYSPTN MQQDIGQSPP GFDNEPVPVS TYQDTEPVPL STYHENEPNQ PQATQQELDD FWENGFNREE AIQEPEPKEN GKRSVDNSSF APGETDLNQL
101: PPIPPVSTGQ GPPYAPVDWP SPGDVWTWRV GRRVTALGFH QDRFLILPQR LQLRNVPKSF ASKPALARYI QMSFPEMDAD AFFASFSWKI PALFQPADKV
201: DAASLFEETP KEVKTEGAAP NDKEGNSRYS QRKRNPMPTF EAAVEKPKAT KKKKGAKTPG TTGPQSSTKP KPSRQSSRRS SNQQSGGAVE LNLQNEEEGG
301: PAAATAPNTS GRRKKRRVNV EEEDVSIPHI YVSPMNGVLA VSHEPIDVDP IEFDSYLNSL ENLLHQGPED AGTESSVLVR ASSPMREYEW AEARMKISSL
401: LEKDFPTLFT SKDAAEIAAL ATKLRKDPNL SAEEIVRLKL MEEIPTFSEV FQENKAVIEE ADRFFSALEL NKAKVASLKY EYSDLKHKLG SIQIEVDENS
501: EAIRQIDEQI AQLQARRGEL KKYIGSKEKE KVDLSYGQKM VANSIPKVVQ EVQAANSKKP EWECKKENAL KREEEILSKF NPLKGFFL
101: PPIPPVSTGQ GPPYAPVDWP SPGDVWTWRV GRRVTALGFH QDRFLILPQR LQLRNVPKSF ASKPALARYI QMSFPEMDAD AFFASFSWKI PALFQPADKV
201: DAASLFEETP KEVKTEGAAP NDKEGNSRYS QRKRNPMPTF EAAVEKPKAT KKKKGAKTPG TTGPQSSTKP KPSRQSSRRS SNQQSGGAVE LNLQNEEEGG
301: PAAATAPNTS GRRKKRRVNV EEEDVSIPHI YVSPMNGVLA VSHEPIDVDP IEFDSYLNSL ENLLHQGPED AGTESSVLVR ASSPMREYEW AEARMKISSL
401: LEKDFPTLFT SKDAAEIAAL ATKLRKDPNL SAEEIVRLKL MEEIPTFSEV FQENKAVIEE ADRFFSALEL NKAKVASLKY EYSDLKHKLG SIQIEVDENS
501: EAIRQIDEQI AQLQARRGEL KKYIGSKEKE KVDLSYGQKM VANSIPKVVQ EVQAANSKKP EWECKKENAL KREEEILSKF NPLKGFFL
001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
Arabidopsis Description
Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.