Factsheet for TraesCS5D01G395300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G225200.1
TraesCS2B01G275100.1
TraesCS2B01G597300.1
TraesCS2D01G231100.1
TraesCS4A01G184600.1
TraesCS4B01G134100.1
TraesCS4D01G129000.1
TraesCS6A01G004600.1
TraesCS6B01G009600.1
TraesCS6D01G006600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	TraesCS2A01G225200.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS2B01G275100.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS2D01G231100.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS4A01G184600.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS4B01G134100.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS4D01G129000.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS2B01G597300.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6A01G004600.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6B01G009600.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6D01G006600.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G390300.3	Wheat	cytosol	98.14	98.14
TraesCS5A01G385300.3	Wheat	cytosol	97.99	97.99
Os03t0747200-01	Rice	cytosol	39.97	61.73
EER90880	Sorghum	cytosol	56.73	57.64
Zm00001d034000_P002	Maize	cytosol	56.88	57.37
PGSC0003DMT400041923	Potato	cytosol	11.03	50.33
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	11.75	47.4
HORVU5Hr1G094660.1	Barley	plastid	28.37	43.81
GSMUA_Achr7P27170_001	Banana	cytosol	30.95	43.37
PGSC0003DMT400082107	Potato	cytosol	28.08	42.06
Solyc09g061580.1.1	Tomato	cytosol	6.73	40.52
PGSC0003DMT400092399	Potato	cytosol	13.61	40.43
AT1G05410.1	Thale cress	cytosol	26.22	38.85
Solyc09g061540.1.1	Tomato	cytosol	6.45	38.79
KRH27646	Soybean	cytosol, nucleus	26.22	38.36
VIT_05s0020g03600.t01	Wine grape	cytosol	27.08	38.26
CDY10107	Canola	cytosol	25.79	38.22
KRH77849	Soybean	nucleus	26.22	38.12
KRG99083	Soybean	nucleus	26.5	37.99
PGSC0003DMT400077585	Potato	cytosol	10.46	37.63
Bra015422.1-P	Field mustard	cytosol	25.07	37.31
CDY47288	Canola	cytosol	25.07	37.16
PGSC0003DMT400059456	Potato	cytosol	18.48	36.44
PGSC0003DMT400090844	Potato	cytosol	5.73	33.33
PGSC0003DMT400077583	Potato	nucleus	19.05	32.76
PGSC0003DMT400077587	Potato	nucleus	13.61	19.23
CDY10650	Canola	nucleus	13.9	16.67
KRH76186	Soybean	nucleus	10.74	16.45
KRH76190	Soybean	nucleus	10.74	16.45
Bra039958.1-P	Field mustard	nucleus	13.47	15.82
PGSC0003DMT400082110	Potato	nucleus	11.17	15.76
CDY10289	Canola	nucleus	13.32	15.71
CDX98211	Canola	nucleus	12.89	15.31
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.18	15.26
CDY34248	Canola	nucleus	12.89	15.23
Bra023822.1-P	Field mustard	nucleus	12.75	15.08
KRH65951	Soybean	plastid	7.45	15.07
AT3G22520.1	Thale cress	nucleus	12.89	15.0
CDX92945	Canola	nucleus	12.18	14.99
CDY24312	Canola	nucleus	12.18	14.94
KRG90260	Soybean	nucleus	10.03	14.89
CDY06487	Canola	nucleus	11.32	14.66
CDY08296	Canola	nucleus	10.89	14.59
Bra037070.1-P	Field mustard	nucleus	10.89	14.59
AT4G14840.1	Thale cress	nucleus	11.46	14.41
KRH33505	Soybean	nucleus	11.75	14.26
VIT_05s0020g03590.t01	Wine grape	nucleus	10.74	13.94
CDY38302	Canola	nucleus	13.75	13.93
VIT_17s0000g05270.t01	Wine grape	nucleus	7.16	11.57
VIT_12s0035g02120.t01	Wine grape	nucleus	5.44	8.58

Protein Annotations

EnsemblPlants:TraesCS5D01G395300.2	EnsemblPlantsGene:TraesCS5D01G395300	InterPro:Myb/SANT-like_dom	InterPro:Oberon_PHD	ncoils:Coil	PANTHER:PTHR31704
PANTHER:PTHR31704:SF65	PFAM:PF07227	PFAM:PF12776	SEG:seg	MapMan:35.2	:

Description

No Description!

Coordinates

chr5D:-:462987041..462992760

Molecular Weight (calculated)

77870.4 Da

IEP (calculated)

5.708

GRAVY (calculated)

-0.500

Length

698 amino acids

Sequence
(BLAST)

001: MTSISTNQFG SGGSNGGSAS RPHGRDMVIW TEEMNEYLID ALMHQQDIGN RSAEGRFLTG AYESVITGVG ERFGVVIDRS NIKNRLKHVK DMFHECENLF
101: DKQSGIKWNP ATRRFHADPQ VWREFIERKP EAKKWMTKTI DHYDRLLELF GKDRAPPASE NSKGPSKKKA RIEPPKDRPQ RQQTSSNGFE LAIVQGSNQV
201: MDKNELPGAV VAENNIIGEL DLSELCKSEN GLVAIPVHGN AYGKGLPYAP ENWPSPGDQW QWKVGNRIAA GGHWVDRYLA PPSRFRDATG KKTTFTSRLK
301: VGEFIKSNFP DVDPSTFFSM FIWKIPAAEG GIQRGTLQVE RVEPEDGLAD PDGPCKARNK ACNLGKEGFI ESSPAGNCDI CCVHPDFCCT CCCILCGKAV
401: NNSFGGYSYI KCEAVVAENY ICGHLAHLDC ALRIFMAGTV GGSIGLDVQY YCRRCDNKTN LMMHVEKLLE TCRSLGSRSE IEPILNMGLC ILRGSRQVQA
501: KSLEDYMASV MEKVNNGVDL AEVWNMEDSD GMPILNAEES SPPVAGVTVL GTEPQYPYLT DPMVDNELQR AAESVPIFIT GDHTEMSLKF EDEIDNSLLE
601: LKKSQEAEYR LAEQKLYSQK DYILSLYRQL ESDRSQLADP NPVSDISSYS VLLSNITNRV EQVKREEEKF QTMLKISKGF RKAPANIKEH FGLPPPAE

Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)

001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL

Arabidopsis Description

Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.