Factsheet for TraesCS2A01G225200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G302600.1
TraesCS3B01G333800.1
TraesCS3D01G299200.1
TraesCS5A01G385300.3
TraesCS5B01G390300.3
TraesCS5D01G395300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62180.1	TraesCS5A01G385300.3	AT1G05410.1	21798944
AT1G62180.1	TraesCS5B01G390300.3	AT1G05410.1	21798944
AT1G62180.1	TraesCS5D01G395300.2	AT1G05410.1	21798944
AT4G21990.1	TraesCS3A01G302600.1	AT5G61010.1	21798944
AT4G21990.1	TraesCS3B01G333800.1	AT5G61010.1	21798944
AT4G21990.1	TraesCS3D01G299200.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G275100.1	Wheat	plastid	99.14	99.14
TraesCS2D01G231100.1	Wheat	plastid	96.54	96.96
HORVU0Hr1G003890.1	Barley	plastid	92.22	93.23
Zm00001d006467_P002	Maize	plastid	81.43	82.68
Zm00001d021596_P001	Maize	plastid	82.07	82.43
GSMUA_Achr2P13890_001	Banana	cytosol	63.07	80.44
EER99437	Sorghum	plastid	79.48	80.0
Os07t0509800-01	Rice	endoplasmic reticulum	76.24	74.0
Bra018501.1-P	Field mustard	cytosol	17.28	71.43
Solyc02g032860.2.1	Tomato	plastid	67.82	68.86
KRH36471	Soybean	plastid	69.55	68.51
CDY16659	Canola	plastid	67.6	68.49
PGSC0003DMT400042488	Potato	plastid	68.03	68.48
PGSC0003DMT400013022	Potato	plastid	67.39	68.42
AT1G62180.1	Thale cress	plastid	66.95	68.28
Solyc03g031620.2.1	Tomato	plastid	67.17	68.2
PGSC0003DMT400051168	Potato	plastid	67.6	68.19
Solyc02g080640.2.1	Tomato	plastid	67.39	67.68
Bra029505.1-P	Field mustard	plastid	66.74	67.61
Bra019406.1-P	Field mustard	plastid	68.03	67.31
Bra013579.1-P	Field mustard	plastid	68.03	67.31
AT4G21990.1	Thale cress	plastid	66.52	67.25
KRH51108	Soybean	plastid	67.6	67.17
KRH11444	Soybean	plastid	68.47	67.16
AT4G04610.1	Thale cress	plastid	67.39	67.1
CDX94560	Canola	plastid	66.31	66.74
CDX94072	Canola	plastid	66.31	66.16
VIT_12s0059g00760.t01	Wine grape	plastid	66.52	65.95
CDX98723	Canola	plastid	66.52	65.81
CDX82892	Canola	plastid	66.74	65.74
CDX79117	Canola	plastid	66.74	65.74
CDY24876	Canola	plastid	68.03	65.35
Bra034466.1-P	Field mustard	plastid	67.39	65.14
CDY07244	Canola	plastid	67.39	64.86
CDY33547	Canola	mitochondrion	23.11	62.57
CDX97317	Canola	cytosol, peroxisome, plastid	20.09	54.07
Bra018502.1-P	Field mustard	cytosol, peroxisome, plastid	20.09	54.07

Protein Annotations

KEGG:00920+1.8.4.9	MapMan:25.2.1.3	Gene3D:3.40.30.10	Gene3D:3.40.50.620	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019419	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR014729	InterPro:PAPS_reduct	PFAM:PF00085
PFAM:PF01507	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR23293	PANTHER:PTHR23293:SF13	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	SUPFAM:SSF52833	TIGRFAMs:TIGR00424	InterPro:Thioredoxin-indep_APS_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2A01G225200	EnsemblPlants:TraesCS2A01G225200.1	TIGR:cd01713	TIGR:cd02993	SEG:seg

Description

No Description!

Coordinates

chr2A:+:228853944..228858086

Molecular Weight (calculated)

50522.4 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.216

Length

463 amino acids

Sequence
(BLAST)

001: MASATASISS HSIALRDLKA ARIGAVRQQV AVVPAGLPAT APKGQRARAV RPLCAAEPAR KPVSASAASS PVAPVEEEAS AVAAVDYEAL VQELVGASPL
101: EIMDRALDMF GSEIAIAFSG AEDVALIEYA KLTGRPFRVF SLDTGRLNPE TYELFDKVEK HYGIHIEYMF PEASEVQDLV RSKGLFSFYE DGHQECCRVR
201: KVRPLRRALK GLKAWITGQR KDQSPGTRAS IPVVQVDPSF EGLDGGAGSL IKWNPVANVD GKDIWTFLRT MDVPVNTLHA QGYVSIGCEP CTRPVLPGQH
301: EREGRWWWED ATAKECGLHK GNIDKEGQAP KVGVNGNGSA EASAPDIFQS QAIVNLTRPG IENLLRLENR AEPWLTVLYA PWCPYCQAME ASYVELAEKL
401: SGSGIKVAKF RADGEQKPFA QAELQLQSFP TILLFPGRTV KPIKYPSEKR DVQSLLAFVN SLR

Best Arabidopsis Sequence Match ( AT4G04610.1 )
(BLAST)

001: MAMSVNVSSS SSSGIINSRF GVSLEPKVSQ IGSLRLLDRV HVAPVSLNLS GKRSSSVKPL NAEPKTKDSM IPLAATMVAE IAEEVEVVEI EDFEELAKKL
101: ENASPLEIMD KALEKYGNDI AIAFSGAEDV ALIEYAHLTG RPFRVFSLDT GRLNPETYRF FDAVEKHYGI RIEYMFPDSV EVQGLVRSKG LFSFYEDGHQ
201: ECCRVRKVRP LRRALKGLKA WITGQRKDQS PGTRSEIPVV QVDPVFEGLD GGVGSLVKWN PVANVEGNDV WNFLRTMDVP VNTLHAAGYI SIGCEPCTKA
301: VLPGQHEREG RWWWEDAKAK ECGLHKGNVK ENSDDAKVNG ESKSAVADIF KSENLVTLSR QGIENLMKLE NRKEPWIVVL YAPWCPFCQA MEASYDELAD
401: KLAGSGIKVA KFRADGDQKE FAKQELQLGS FPTILVFPKN SSRPIKYPSE KRDVESLTSF LNLVR

Arabidopsis Description

APR15'-adenylylsulfate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P92979]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.