Factsheet for TraesCS5A01G385300.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G225200.1
TraesCS2B01G275100.1
TraesCS2B01G597300.1
TraesCS2D01G231100.1
TraesCS4A01G184600.1
TraesCS4B01G134100.1
TraesCS4D01G129000.1
TraesCS6A01G004600.1
TraesCS6B01G009600.1
TraesCS6D01G006600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	TraesCS2A01G225200.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS2B01G275100.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS2D01G231100.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS4A01G184600.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS4B01G134100.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS4D01G129000.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS2B01G597300.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6A01G004600.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6B01G009600.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6D01G006600.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	97.99	97.99
TraesCS5B01G390300.3	Wheat	cytosol	97.56	97.56
Os03t0747200-01	Rice	cytosol	39.4	60.84
EER90880	Sorghum	cytosol	56.45	57.35
Zm00001d034000_P002	Maize	cytosol	56.59	57.08
PGSC0003DMT400041923	Potato	cytosol	11.03	50.33
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	11.75	47.4
HORVU5Hr1G094660.1	Barley	plastid	28.51	44.03
GSMUA_Achr7P27170_001	Banana	cytosol	31.38	43.98
PGSC0003DMT400082107	Potato	cytosol	27.65	41.42
Solyc09g061580.1.1	Tomato	cytosol	6.73	40.52
PGSC0003DMT400092399	Potato	cytosol	13.61	40.43
Solyc09g061540.1.1	Tomato	cytosol	6.45	38.79
AT1G05410.1	Thale cress	cytosol	25.79	38.22
VIT_05s0020g03600.t01	Wine grape	cytosol	26.93	38.06
CDY10107	Canola	cytosol	25.64	38.0
KRH27646	Soybean	cytosol, nucleus	25.79	37.74
KRH77849	Soybean	nucleus	25.79	37.5
KRG99083	Soybean	nucleus	26.07	37.37
PGSC0003DMT400077585	Potato	cytosol	10.32	37.11
Bra015422.1-P	Field mustard	cytosol	24.93	37.1
CDY47288	Canola	cytosol	24.93	36.94
PGSC0003DMT400059456	Potato	cytosol	18.48	36.44
PGSC0003DMT400090844	Potato	cytosol	5.73	33.33
PGSC0003DMT400077583	Potato	nucleus	19.2	33.0
PGSC0003DMT400077587	Potato	nucleus	13.61	19.23
KRH76186	Soybean	nucleus	11.03	16.89
KRH76190	Soybean	nucleus	11.03	16.89
CDY10650	Canola	nucleus	13.61	16.32
KRH65951	Soybean	plastid	7.74	15.65
AT3G22520.1	Thale cress	nucleus	13.32	15.5
Bra039958.1-P	Field mustard	nucleus	13.18	15.49
CDY10289	Canola	nucleus	13.04	15.37
PGSC0003DMT400082110	Potato	nucleus	10.89	15.35
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.18	15.26
CDX92945	Canola	nucleus	12.18	14.99
KRG90260	Soybean	nucleus	10.03	14.89
CDX98211	Canola	nucleus	12.46	14.8
CDY24312	Canola	nucleus	12.03	14.76
CDY34248	Canola	nucleus	12.46	14.72
CDY06487	Canola	nucleus	11.32	14.66
CDY08296	Canola	nucleus	10.89	14.59
Bra037070.1-P	Field mustard	nucleus	10.89	14.59
Bra023822.1-P	Field mustard	nucleus	12.32	14.58
KRH33505	Soybean	nucleus	11.75	14.26
AT4G14840.1	Thale cress	nucleus	11.32	14.23
VIT_05s0020g03590.t01	Wine grape	nucleus	10.74	13.94
CDY38302	Canola	nucleus	13.61	13.79
VIT_17s0000g05270.t01	Wine grape	nucleus	7.02	11.34
VIT_12s0035g02120.t01	Wine grape	nucleus	5.44	8.58

Protein Annotations

EnsemblPlants:TraesCS5A01G385300.3	EnsemblPlantsGene:TraesCS5A01G385300	InterPro:Myb/SANT-like_dom	InterPro:Oberon_PHD	PANTHER:PTHR31704	PANTHER:PTHR31704:SF65
PFAM:PF07227	PFAM:PF12776	SEG:seg	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5A:-:582961559..582967068

Molecular Weight (calculated)

77886.4 Da

IEP (calculated)

5.904

GRAVY (calculated)

-0.500

Length

698 amino acids

Sequence
(BLAST)

001: MTSISTNQFG SGGSNGGSAS RPHGRDMVIW TEEMNEYLID ALMHQQDIGN RSAEGRFLTG AYESVITGVG ERFGVVIDRS NIKNRLKHVK DMFHECENLF
101: DKQSGIKWNP ATRRFHADPQ VWREFIERKP EAKKWMTKTI DHYDRLLELF GKDRAPPASE NSKGPSKKKA RIEPPKDRPQ RQQTSSNGFE LAIVQGSNQV
201: MDKNELSGAV VAENNIIGEL DLSELCKSEN GLVAIPVHGN AYGKGLPYAP ENWPSPGDQW QWKVGSRIAA GGHWVDRYLA PPSRFRDATG KKTTFTSRLK
301: VGEFIKSNFP DVDPSTFFSM FIWKIPAAEG GIQRGALQVE RVEPEDGLAD PDGPCKARNK ACNLGKEGFI ESSPAGNCDI CCVHPDFCRT CCCILCGKAV
401: NNSFEGYSYI KCEAVVAENY ICGHLAHLDC ALRIFMAGTV GGSIGLDVQY YCRRCDNKTN LMMHVEKLLE TCRSLGSKSE IEPILNMGLC ILRGSRQLQA
501: KSLEDYMASV MEKVNNGVDL AEVWNMEDGD GMPILNAEES SPPIAGVTVL GAEPQYPYLT DPMVDNELHK AAESVPIFIT GDHTEMSLKF EDEIDNSLLE
601: LKRSQEAEYR LAEQKLYSQK DYILSLYRQL ESDRSQLADP NPVSDISSYS VLLSNITNRV EHVKREEEKF QTMLKISKGF RKAPANIKEH FGLPPPAE

Best Arabidopsis Sequence Match ( AT4G14840.3 )
(BLAST)

001: MDMDQEIGQN SPGFDGESVV SMSNRSKETE PVPVENDYYR ENGFNSDGDG DDVKVNGDRS SFTDLNQLPA IPPASSGQGL PFAPVDFPSP GDVWTWRVGR
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL

Arabidopsis Description

At4g14840 [Source:UniProtKB/TrEMBL;Acc:O23339]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.