Factsheet for VIT_05s0020g03600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s1490g00010.t01
VIT_02s0087g00100.t01
VIT_05s0029g01220.t01
VIT_10s0116g01650.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	VIT_00s1490g00010.t01	AT4G21990.1	21798944
AT1G05410.1	VIT_10s0116g01650.t01	AT4G21990.1	21798944
AT1G05410.1	VIT_05s0029g01220.t01	AT5G49210.1	21798944
AT1G05410.1	VIT_02s0087g00100.t01	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060020.1.1	Tomato	cytosol	8.91	58.67
Solyc09g061590.1.1	Tomato	cytosol	11.54	57.58
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	20.04	57.23
Solyc09g060060.1.1	Tomato	cytosol	6.88	56.67
PGSC0003DMT400041923	Potato	cytosol	17.41	56.21
Solyc09g082140.2.1	Tomato	cytosol, nucleus	34.01	50.76
PGSC0003DMT400082107	Potato	cytosol	47.77	50.64
PGSC0003DMT400092399	Potato	cytosol	24.09	50.64
Solyc09g061600.1.1	Tomato	cytosol	8.1	50.63
PGSC0003DMT400077585	Potato	cytosol	18.83	47.94
Solyc06g054230.2.1	Tomato	cytosol	31.17	46.95
CDY10107	Canola	cytosol	44.53	46.71
Solyc09g061370.1.1	Tomato	cytosol	18.22	46.39
Bra015422.1-P	Field mustard	cytosol	43.93	46.27
Solyc09g061260.1.1	Tomato	cytosol	31.98	45.93
CDY47288	Canola	cytosol	43.72	45.86
PGSC0003DMT400059456	Potato	cytosol	32.59	45.48
Solyc09g059900.1.1	Tomato	cytosol	6.07	45.45
Solyc09g059870.1.1	Tomato	cytosol	11.94	45.38
AT1G05410.1	Thale cress	cytosol	42.31	44.37
PGSC0003DMT400090844	Potato	cytosol	10.73	44.17
Solyc09g059740.1.1	Tomato	cytosol	24.9	44.09
Solyc06g054210.1.1	Tomato	nucleus	11.74	43.94
Solyc09g059890.1.1	Tomato	cytosol	19.43	43.44
GSMUA_Achr7P27170_001	Banana	cytosol	42.91	42.57
Solyc06g054190.1.1	Tomato	cytosol	11.34	42.42
Solyc06g054200.1.1	Tomato	cytosol	18.83	42.08
KRH27646	Soybean	cytosol, nucleus	40.49	41.93
Solyc06g054180.1.1	Tomato	cytosol	20.85	41.7
KRG99083	Soybean	nucleus	41.09	41.68
Solyc09g061490.1.1	Tomato	nucleus	11.13	41.67
KRH77849	Soybean	nucleus	40.49	41.67
PGSC0003DMT400077583	Potato	nucleus	34.21	41.63
Solyc09g061500.1.1	Tomato	cytosol	10.53	41.6
Solyc09g059860.1.1	Tomato	cytosol	6.68	40.74
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	20.65	40.48
Solyc09g061360.1.1	Tomato	nucleus	8.3	39.42
Solyc06g054170.1.1	Tomato	cytosol	10.53	39.39
Solyc09g061560.1.1	Tomato	mitochondrion	12.96	38.1
Solyc09g059910.1.1	Tomato	extracellular	20.24	37.88
Solyc10g018690.1.1	Tomato	cytosol	6.28	36.47
Solyc09g060010.1.1	Tomato	extracellular	11.13	36.42
Os03t0747200-01	Rice	cytosol	33.2	36.28
TraesCS5B01G390300.3	Wheat	cytosol	38.66	27.36
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	38.26	27.08
TraesCS5A01G385300.3	Wheat	cytosol	38.06	26.93
EER90880	Sorghum	cytosol	37.25	26.78
HORVU5Hr1G094660.1	Barley	plastid	24.29	26.55
Zm00001d034000_P002	Maize	cytosol	36.84	26.3
PGSC0003DMT400077587	Potato	nucleus	20.45	20.45
VIT_05s0020g03590.t01	Wine grape	nucleus	20.65	18.96
VIT_17s0000g05270.t01	Wine grape	nucleus	10.12	11.57
VIT_12s0035g02120.t01	Wine grape	nucleus	9.11	10.16

Protein Annotations

ArrayExpress:VIT_05s0020g03600	EMBL:FN595749	EnsemblPlants:VIT_05s0020g03600.t01	EnsemblPlantsGene:VIT_05s0020g03600	EntrezGene:100252843	EntrezGene:LOC100252843
InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227	ProteinID:CCB50432	ProteinID:CCB50432.1
RefSeq:XP_002278711	RefSeq:XP_002278711.1	SEG:seg	unigene:Vvi.24060	UniParc:UPI000210A3FE	UniProt:F6HDR1
wikigene:100252843	wikigene:LOC100252843	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5:+:5320070..5333812

Molecular Weight (calculated)

54308.8 Da

IEP (calculated)

7.922

GRAVY (calculated)

-0.318

Length

494 amino acids

Sequence
(BLAST)

001: MASKATATSS IQKVLWLVEA HTFLASSSST QTTKGPMEVE LHESNGSTAG IKDNGLHLYP VPLQASGQGL PYAPIDWPCP GDVCGWKVGR RVTGSGYHLD
101: RYLYLPSRFS KKSFSSKVAL EQHVRKEFPD TDIDNFFRSF SWRVLFKKAS STKDREEDCP REVAAQSRPD SQLETGGCKA GNRLCSSLAL AARNTHLAMN
201: CDICCTEPSF CRDCSCVLCC KSIASSYSFI KCEAPVSEGY ICGHVAHMDC ALRSYLAGTV GGSIGLDAEY HCRRCDMRTD LVSHVARLLK TCESVDSRDD
301: IEKILGVGIC ILRGSRKASA KKLLNQIELA MTKLKSGTAV EDIWKAVVDT LALPAAGSFH GKDALEVTNP QTTLDVHIIS NQGSESQRLD DEIDKVLQAL
401: RKSQVSEYKI AEERLYAQKS HLLTLYKQLE EGRSQLSRGL SSASTSALLD AIVNTSDRIR QEVKKLRDME KVAKGFGKTP KGILKENFTL EVED

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.