Factsheet for Solyc06g054160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	61.51	89.6
Solyc09g061590.1.1	Tomato	cytosol	31.35	79.8
PGSC0003DMT400041923	Potato	cytosol	48.41	79.74
Solyc06g054180.1.1	Tomato	cytosol	76.59	78.14
Solyc09g060020.1.1	Tomato	cytosol	20.63	69.33
Solyc09g060060.1.1	Tomato	cytosol	16.27	68.33
Solyc06g054200.1.1	Tomato	cytosol	59.13	67.42
Solyc09g061370.1.1	Tomato	cytosol	50.0	64.95
Solyc09g061600.1.1	Tomato	cytosol	20.24	64.56
Solyc09g061540.1.1	Tomato	cytosol	28.97	62.93
Solyc09g061580.1.1	Tomato	cytosol	28.97	62.93
Solyc09g061500.1.1	Tomato	cytosol	30.95	62.4
Solyc09g061560.1.1	Tomato	mitochondrion	39.68	59.52
Solyc09g059900.1.1	Tomato	cytosol	13.89	53.03
Solyc06g054230.2.1	Tomato	cytosol	53.17	40.85
Solyc09g061260.1.1	Tomato	cytosol	49.6	36.34
Solyc09g059870.1.1	Tomato	cytosol	18.65	36.15
Solyc09g059890.1.1	Tomato	cytosol	29.76	33.94
Solyc09g059910.1.1	Tomato	extracellular	34.92	33.33
Solyc09g082140.2.1	Tomato	cytosol, nucleus	42.06	32.02
Solyc09g059740.1.1	Tomato	cytosol	33.73	30.47
Solyc09g060010.1.1	Tomato	extracellular	13.1	21.85
CDY10107	Canola	cytosol	39.68	21.23
Bra015422.1-P	Field mustard	cytosol	39.29	21.11
CDY47288	Canola	cytosol	39.29	21.02
AT1G05410.1	Thale cress	cytosol	38.89	20.81
VIT_05s0020g03600.t01	Wine grape	cytosol	40.48	20.65
KRH27646	Soybean	cytosol, nucleus	36.51	19.29
KRH77849	Soybean	nucleus	36.11	18.96
KRG99083	Soybean	nucleus	36.51	18.89
Solyc09g059860.1.1	Tomato	cytosol	1.59	4.94
PGSC0003DMT400090844	Potato	cytosol	1.98	4.17
Solyc09g061360.1.1	Tomato	nucleus	1.59	3.85
Solyc06g054210.1.1	Tomato	nucleus	1.98	3.79
Solyc06g054190.1.1	Tomato	cytosol	1.98	3.79
Solyc06g054170.1.1	Tomato	cytosol	1.98	3.79
Solyc10g018690.1.1	Tomato	cytosol	1.19	3.53
Solyc09g082130.2.1	Tomato	nucleus	5.16	3.14
Solyc09g061490.1.1	Tomato	nucleus	1.59	3.03

Protein Annotations

EnsemblPlants:Solyc06g054160.1.1	EnsemblPlantsGene:Solyc06g054160.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
UniParc:UPI0002765984	UniProt:K4C6A3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6:-:36972003..36973810

Molecular Weight (calculated)

27694.0 Da

IEP (calculated)

8.016

GRAVY (calculated)

0.173

Length

252 amino acids

Sequence
(BLAST)

001: MQPLLSDSPF GVITCKAGNR ICSSLTAENP LTSTRFCDLC CSEPGFCGDC CCILCGKLIV LDYDGYSYIR CEATVVDGHI CGHVSHLECA LRSYMAGTVK
101: GSINLNAEYL CRYCDSRTDL VPHALKLLSI CTSVASYADI KKILNLGIRI LCHSQKSSAK ELLDRIKPIN AKLVKGVGIQ DALKRENCGD STEQLAADRW
201: SRIRPPVLMT LVAGLLSYRR FPLLIAEVIK IVPIRLGWHV HLLCDSSCDH GR

Best Arabidopsis Sequence Match ( AT1G05410.2 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVGPRISGKG YFVDRYLYPP KYLPGLDTEI LRKNKVFRSR LSLQRYIRVH FPEADVQKFF ASFSWSIPCR DGQGVLPQKQ
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.