Factsheet for Solyc02g032860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115070.1.1
Solyc06g054160.1.1
Solyc06g054170.1.1
Solyc06g054180.1.1
Solyc06g054190.1.1
Solyc06g054200.1.1
Solyc06g054210.1.1
Solyc06g054230.2.1
Solyc09g059740.1.1
Solyc09g059860.1.1
Solyc09g059870.1.1
Solyc09g059890.1.1
Solyc09g059900.1.1
Solyc09g059910.1.1
Solyc09g060010.1.1
Solyc09g060020.1.1
Solyc09g060060.1.1
Solyc09g061260.1.1
Solyc09g061360.1.1
Solyc09g061370.1.1
Solyc09g061490.1.1
Solyc09g061500.1.1
Solyc09g061560.1.1
Solyc09g061590.1.1
Solyc09g061600.1.1
Solyc09g082140.2.1
Solyc10g018690.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62180.1	Solyc06g054160.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc06g054170.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc06g054180.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc06g054190.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc06g054200.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc06g054210.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc06g054230.2.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g059740.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g059860.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g059870.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g059890.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g059900.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g059910.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g060010.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g060020.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g060060.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061260.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061360.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061370.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061490.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061500.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061560.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061590.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g061600.1.1	AT1G05410.1	21798944
AT1G62180.1	Solyc09g082140.2.1	AT1G05410.1	21798944
AT1G62180.1	Solyc10g018690.1.1	AT1G05410.1	21798944
AT4G21990.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051168	Potato	plastid	93.2	92.59
Solyc02g080640.2.1	Tomato	plastid	83.77	82.86
GSMUA_Achr2P13890_001	Banana	cytosol	64.04	80.44
Solyc03g031620.2.1	Tomato	plastid	78.07	78.07
Bra018501.1-P	Field mustard	cytosol	18.86	76.79
KRH36471	Soybean	plastid	78.29	75.96
KRH11444	Soybean	plastid	77.85	75.21
KRH51108	Soybean	plastid	76.54	74.89
CDY16659	Canola	plastid	74.56	74.4
AT1G62180.1	Thale cress	plastid	73.9	74.23
Bra029505.1-P	Field mustard	plastid	73.9	73.74
AT4G21990.1	Thale cress	plastid	73.46	73.14
CDX94560	Canola	plastid	73.25	72.61
VIT_12s0059g00760.t01	Wine grape	plastid	73.9	72.16
CDX79117	Canola	plastid	74.34	72.13
Bra013579.1-P	Field mustard	plastid	73.68	71.79
AT4G04610.1	Thale cress	plastid	73.03	71.61
CDX82892	Canola	plastid	73.68	71.49
CDX94072	Canola	plastid	71.93	70.69
CDX98723	Canola	plastid	72.15	70.3
Zm00001d006467_P002	Maize	plastid	69.96	69.96
Bra019406.1-P	Field mustard	plastid	71.71	69.87
Zm00001d021596_P001	Maize	plastid	69.96	69.2
CDY07244	Canola	plastid	72.59	68.81
HORVU0Hr1G003890.1	Barley	plastid	69.08	68.78
CDY24876	Canola	plastid	72.37	68.46
CDY33547	Canola	mitochondrion	25.66	68.42
TraesCS2B01G275100.1	Wheat	plastid	69.3	68.25
Bra034466.1-P	Field mustard	plastid	71.49	68.06
EER99437	Sorghum	plastid	68.64	68.04
TraesCS2A01G225200.1	Wheat	plastid	68.86	67.82
TraesCS2D01G231100.1	Wheat	plastid	68.42	67.68
Os07t0509800-01	Rice	endoplasmic reticulum	69.52	66.46
CDX97317	Canola	cytosol, peroxisome, plastid	21.27	56.4
Bra018502.1-P	Field mustard	cytosol, peroxisome, plastid	21.27	56.4

Protein Annotations

KEGG:00920+1.8.4.9	MapMan:25.2.1.3	Gene3D:3.40.30.10	Gene3D:3.40.50.620	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004604	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019419	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR014729	UniProt:K4B5N0	InterPro:PAPS_reduct
PFAM:PF00085	PFAM:PF01507	PFscan:PS51352	PANTHER:PTHR23293	PANTHER:PTHR23293:SF13	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc02g032860.2	EnsemblPlants:Solyc02g032860.2.1	TIGRFAMs:TIGR00424	InterPro:Thioredoxin-indep_APS_Rdtase
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000276756E	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:29432759..29435213

Molecular Weight (calculated)

50706.3 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.361

Length

456 amino acids

Sequence
(BLAST)

001: MALAFTSSTA IHGSISSSSH QHPKVGNIQL LDQPKKSLNF TQRRCAVKPL YAEPKRNESI VPSAATFVAP EVAEKLIEAE DFEKLAKDLE NASPLEIMDN
101: ALEKFGDDIA IAFSGAEDVA LIEYAHLTGR PFRVFSLDTG RLNPETYQLF DAVEKHYGIR IEYMFPDAVE VQALVRTKGL FSFYEDGHQE CCRVRKVRPL
201: RRALKGLRAW ITGQRKDQSP GTRSEVPVVQ VDPSFEGLDG GSGSLVKWNP VANVEGKDIW NFLRAMNVPV NSLHLKGYVS IGCEPCTRPV LPGQHEREGR
301: WWWEDAKAKE CGLHKGNIKA ESVNGNGNNA TQTNDTVADI FDTKGIVTLS RPGVENLLKL EDGREPWLVV LYAPWCQFCQ AMEGSYVELA EKLGGSGVKV
401: GKFRADGEQK TFAQQELQLG SFPTILFFPK HASQPIKYPS EKRDVNSLLA FVNALR

Best Arabidopsis Sequence Match ( AT4G21990.1 )
(BLAST)

001: MALAINVSSS SSSAISSSSF PSSDLKVTKI GSLRLLNRTN VSAASLSLSG KRSSVKALNV QSITKESIVA SEVTEKLDVV EVEDFEELAK RLENASPLEI
101: MDKALEKFGN DIAIAFSGAE DVALIEYAHL TGRPYRVFSL DTGRLNPETY RLFDTVEKHY GIRIEYMFPD AVEVQALVRN KGLFSFYEDG HQECCRIRKV
201: RPLRRALKGL RAWITGQRKD QSPGTRSEIP VVQVDPVFEG LDGGVGSLVK WNPVANVEGN DVWNFLRTMD VPVNTLHAAG YVSIGCEPCT RAVLPGQHER
301: EGRWWWEDAK AKECGLHKGN IKENTNGNAT ANVNGTASVA DIFNSENVVN LSRQGIENLM KLENRKEAWI VVLYAPWCPF CQAMEASFDE LADKLGGSGV
401: KVAKFRADGD QKDFAKKELQ LGSFPTILVF PKNSSRPIKY PSEKRDVDSL TSFLNLVR

Arabidopsis Description

APR35'-adenylylsulfate reductase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P92980]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.