Factsheet for Solyc06g054210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g054190.1.1	Tomato	cytosol	84.09	84.09
Solyc06g054170.1.1	Tomato	cytosol	82.58	82.58
Solyc09g061490.1.1	Tomato	nucleus	78.79	78.79
Solyc09g061360.1.1	Tomato	nucleus	58.33	74.04
Solyc09g059860.1.1	Tomato	cytosol	31.82	51.85
Solyc10g018690.1.1	Tomato	cytosol	30.3	47.06
Solyc06g054230.2.1	Tomato	cytosol	72.73	29.27
Solyc09g059890.1.1	Tomato	cytosol	47.73	28.51
Solyc09g059740.1.1	Tomato	cytosol	59.09	27.96
Solyc09g061260.1.1	Tomato	cytosol	62.12	23.84
PGSC0003DMT400077585	Potato	cytosol	33.33	22.68
Solyc09g060010.1.1	Tomato	extracellular	21.21	18.54
Solyc09g059870.1.1	Tomato	cytosol	17.42	17.69
Solyc09g059910.1.1	Tomato	extracellular	27.27	13.64
VIT_05s0020g03600.t01	Wine grape	cytosol	43.94	11.74
KRH77849	Soybean	nucleus	38.64	10.62
CDY10107	Canola	cytosol	37.88	10.62
KRH27646	Soybean	cytosol, nucleus	37.88	10.48
CDY47288	Canola	cytosol	37.12	10.4
AT1G05410.1	Thale cress	cytosol	37.12	10.4
Bra015422.1-P	Field mustard	cytosol	36.36	10.23
KRG99083	Soybean	nucleus	37.12	10.06
Solyc09g061500.1.1	Tomato	cytosol	4.55	4.8
Solyc09g082130.2.1	Tomato	nucleus	13.64	4.35
Solyc09g061580.1.1	Tomato	cytosol	3.79	4.31
Solyc09g061370.1.1	Tomato	cytosol	5.3	3.61
Solyc09g061540.1.1	Tomato	cytosol	3.03	3.45
Solyc06g054200.1.1	Tomato	cytosol	5.3	3.17
Solyc09g061560.1.1	Tomato	mitochondrion	3.79	2.98
Solyc06g054180.1.1	Tomato	cytosol	3.79	2.02
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	3.79	1.98
Solyc09g060060.1.1	Tomato	cytosol	0.76	1.67
Solyc09g059900.1.1	Tomato	cytosol	0.76	1.52
Solyc09g060020.1.1	Tomato	cytosol	0.76	1.33
Solyc09g061600.1.1	Tomato	cytosol	0.76	1.27
Solyc09g082140.2.1	Tomato	cytosol, nucleus	3.03	1.21
Solyc09g061590.1.1	Tomato	cytosol	0.76	1.01

Protein Annotations

EnsemblPlants:Solyc06g054210.1.1

EnsemblPlantsGene:Solyc06g054210.1

PANTHER:PTHR33345

UniParc:UPI0002765989

UniProt:K4C6A8

MapMan:35.2

Description

No Description!

Coordinates

chr6:-:37025073..37025471

Molecular Weight (calculated)

15074.6 Da

IEP (calculated)

7.488

GRAVY (calculated)

-0.770

Length

132 amino acids

Sequence
(BLAST)

001: MSVKEEVGES LAFVVYDESA STINETGLQL YPVSEYEYGE GLPYAPMDWP NVGDKWGWRT GRRATNSGTF KDRYLYLPER FQAPKDGKKN AFRSKTSVKK
101: YLQSEYPGMD IDQFFASFSW MIPSKHSPSS KG

Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)

001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL

Arabidopsis Description

Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.