Factsheet for Solyc10g018690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g059860.1.1	Tomato	cytosol	50.59	53.09
Solyc09g061360.1.1	Tomato	nucleus	48.24	39.42
Solyc06g054170.1.1	Tomato	cytosol	52.94	34.09
Solyc06g054190.1.1	Tomato	cytosol	51.76	33.33
Solyc09g061490.1.1	Tomato	nucleus	49.41	31.82
Solyc06g054210.1.1	Tomato	nucleus	47.06	30.3
PGSC0003DMT400077585	Potato	cytosol	38.82	17.01
Solyc09g059740.1.1	Tomato	cytosol	47.06	14.34
Solyc06g054230.2.1	Tomato	cytosol	54.12	14.02
Solyc09g059890.1.1	Tomato	cytosol	31.76	12.22
Solyc09g061260.1.1	Tomato	cytosol	44.71	11.05
Solyc09g059910.1.1	Tomato	extracellular	22.35	7.2
VIT_05s0020g03600.t01	Wine grape	cytosol	36.47	6.28
AT1G05410.1	Thale cress	cytosol	30.59	5.52
Bra015422.1-P	Field mustard	cytosol	29.41	5.33
CDY10107	Canola	cytosol	29.41	5.31
CDY47288	Canola	cytosol	29.41	5.31
Solyc09g060010.1.1	Tomato	extracellular	9.41	5.3
KRH27646	Soybean	cytosol, nucleus	27.06	4.82
KRH77849	Soybean	nucleus	25.88	4.58
KRG99083	Soybean	nucleus	25.88	4.52
Solyc09g061500.1.1	Tomato	cytosol	5.88	4.0
Solyc09g061580.1.1	Tomato	cytosol	4.71	3.45
Solyc09g061540.1.1	Tomato	cytosol	3.53	2.59
Solyc09g061370.1.1	Tomato	cytosol	5.88	2.58
Solyc09g061560.1.1	Tomato	mitochondrion	4.71	2.38
Solyc06g054200.1.1	Tomato	cytosol	5.88	2.26
Solyc06g054180.1.1	Tomato	cytosol	3.53	1.21
Solyc09g082140.2.1	Tomato	cytosol, nucleus	4.71	1.21
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	3.53	1.19
Solyc09g060060.1.1	Tomato	cytosol	0.0	0.0
Solyc09g060020.1.1	Tomato	cytosol	0.0	0.0
Solyc09g059900.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061590.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061600.1.1	Tomato	cytosol	0.0	0.0
Solyc09g082130.2.1	Tomato	nucleus	0.0	0.0
Solyc09g059870.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc10g018690.1.1

EnsemblPlantsGene:Solyc10g018690.1

PANTHER:PTHR33345

UniParc:UPI000276C98C

UniProt:K4CYZ0

MapMan:35.2

Description

No Description!

Coordinates

chr10:-:9242085..9242342

Molecular Weight (calculated)

9627.4 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.415

Length

85 amino acids

Sequence
(BLAST)

1: MEGVAENHTL VVYNGSASRI SYIGLRIFPV SEYYSGEGLP YSHVEFPIVD DKRGWEAGIR ATVLGTLKDR YLYLPKRYQT PKDGN

Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)

001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL

Arabidopsis Description

Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.