Factsheet for Solyc09g061600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
plastid 1
nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	nucleus, peroxisome, plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060060.1.1	Tomato	cytosol	54.43	71.67
Solyc09g059900.1.1	Tomato	cytosol	40.51	48.48
Solyc09g060020.1.1	Tomato	cytosol	45.57	48.0
Solyc09g061590.1.1	Tomato	cytosol	59.49	47.47
Solyc09g061370.1.1	Tomato	cytosol	79.75	32.47
Solyc09g059870.1.1	Tomato	cytosol	51.9	31.54
Solyc06g054200.1.1	Tomato	cytosol	75.95	27.15
Solyc09g061500.1.1	Tomato	cytosol	35.44	22.4
Solyc09g061560.1.1	Tomato	mitochondrion	45.57	21.43
Solyc06g054180.1.1	Tomato	cytosol	64.56	20.65
Solyc09g059890.1.1	Tomato	cytosol	56.96	20.36
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	64.56	20.24
Solyc09g060010.1.1	Tomato	extracellular	37.97	19.87
Solyc06g054230.2.1	Tomato	cytosol	68.35	16.46
Solyc09g061260.1.1	Tomato	cytosol	63.29	14.53
Solyc09g059910.1.1	Tomato	extracellular	44.3	13.26
Solyc09g082140.2.1	Tomato	cytosol, nucleus	49.37	11.78
Solyc09g059740.1.1	Tomato	cytosol	36.71	10.39
Solyc09g061540.1.1	Tomato	cytosol	12.66	8.62
VIT_05s0020g03600.t01	Wine grape	cytosol	50.63	8.1
Bra015422.1-P	Field mustard	cytosol	46.84	7.89
CDY47288	Canola	cytosol	46.84	7.86
CDY10107	Canola	cytosol	46.84	7.86
Solyc09g061580.1.1	Tomato	cytosol	11.39	7.76
KRH27646	Soybean	cytosol, nucleus	44.3	7.34
AT1G05410.1	Thale cress	cytosol	43.04	7.22
KRG99083	Soybean	nucleus	44.3	7.19
KRH77849	Soybean	nucleus	43.04	7.08
Solyc09g082130.2.1	Tomato	nucleus	11.39	2.17
Solyc06g054210.1.1	Tomato	nucleus	1.27	0.76
Solyc06g054190.1.1	Tomato	cytosol	1.27	0.76
Solyc06g054170.1.1	Tomato	cytosol	1.27	0.76
Solyc09g061490.1.1	Tomato	nucleus	1.27	0.76
Solyc09g059860.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061360.1.1	Tomato	nucleus	0.0	0.0
Solyc10g018690.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g061600.1.1	EnsemblPlantsGene:Solyc09g061600.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
UniParc:UPI000276BB59	UniProt:K4CTZ3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr9:+:59943966..59944205

Molecular Weight (calculated)

8948.0 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.025

Length

79 amino acids

Sequence
(BLAST)

1: MAGRFGGSIN LDVQYLCRYC DSRMDLVPHY SKHLNICTSI ASYANIENTF NVGIRILRGS KKSIAKTFLH RIELINAKV

Best Arabidopsis Sequence Match ( AT1G05410.2 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVGPRISGKG YFVDRYLYPP KYLPGLDTEI LRKNKVFRSR LSLQRYIRVH FPEADVQKFF ASFSWSIPCR DGQGVLPQKQ
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.