Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra012976.1-P
Bra013579.1-P
Bra019406.1-P
Bra020657.1-P
Bra037430.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05410.1 Bra013579.1-P AT4G21990.1 21798944
AT1G05410.1 Bra019406.1-P AT4G21990.1 21798944
AT1G05410.1 Bra020657.1-P AT5G49210.1 21798944
AT1G05410.1 Bra037430.1-P AT5G49210.1 21798944
AT1G05410.1 Bra012976.1-P AT5G61230.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47288 Canola cytosol 98.29 97.88
CDY10107 Canola cytosol 94.46 94.06
AT1G05410.1 Thale cress cytosol 74.2 73.89
Solyc09g061590.1.1 Tomato cytosol 12.15 57.58
PGSC0003DMT400041923 Potato cytosol 18.76 57.52
PGSC0003DMT400017291 Potato cytosol, peroxisome, plastid 20.9 56.65
Solyc09g060020.1.1 Tomato cytosol 8.53 53.33
Solyc09g060060.1.1 Tomato cytosol 6.61 51.67
Solyc09g082140.2.1 Tomato cytosol, nucleus 33.26 47.13
Solyc09g061370.1.1 Tomato cytosol 19.4 46.91
Solyc09g061600.1.1 Tomato cytosol 7.89 46.84
Solyc09g061500.1.1 Tomato cytosol 12.15 45.6
Solyc06g054230.2.1 Tomato cytosol 31.77 45.43
PGSC0003DMT400082107 Potato cytosol 44.56 44.85
Solyc06g054200.1.1 Tomato cytosol 20.9 44.34
VIT_05s0020g03600.t01 Wine grape cytosol 46.27 43.93
PGSC0003DMT400092399 Potato cytosol 21.75 43.4
PGSC0003DMT400077585 Potato cytosol 17.91 43.3
Solyc09g059870.1.1 Tomato cytosol 11.94 43.08
Solyc09g059890.1.1 Tomato cytosol 20.04 42.53
KRH77849 Soybean nucleus 43.5 42.5
Solyc09g059900.1.1 Tomato cytosol 5.97 42.42
Solyc09g061560.1.1 Tomato mitochondrion 15.14 42.26
PGSC0003DMT400059456 Potato cytosol 31.56 41.81
KRH27646 Soybean cytosol, nucleus 42.22 41.51
KRG99083 Soybean nucleus 42.86 41.27
GSMUA_Achr7P27170_001 Banana cytosol 43.71 41.16
Solyc09g059740.1.1 Tomato cytosol 24.31 40.86
Solyc09g061260.1.1 Tomato cytosol 29.85 40.7
Solyc06g054180.1.1 Tomato cytosol 21.32 40.49
Solyc06g054160.1.1 Tomato cytosol, peroxisome, plastid 21.11 39.29
Solyc06g054170.1.1 Tomato cytosol 10.66 37.88
Solyc06g054190.1.1 Tomato cytosol 10.45 37.12
Solyc06g054210.1.1 Tomato nucleus 10.23 36.36
PGSC0003DMT400077583 Potato nucleus 31.34 36.21
Solyc09g059910.1.1 Tomato extracellular 20.04 35.61
Solyc09g061490.1.1 Tomato nucleus 10.02 35.61
Os03t0747200-01 Rice cytosol 33.9 35.18
Solyc09g061360.1.1 Tomato nucleus 7.68 34.62
PGSC0003DMT400090844 Potato cytosol 8.53 33.33
Solyc09g060010.1.1 Tomato extracellular 10.02 31.13
Solyc10g018690.1.1 Tomato cytosol 5.33 29.41
Solyc09g059860.1.1 Tomato cytosol 4.9 28.4
TraesCS5B01G390300.3 Wheat cytosol 37.31 25.07
TraesCS5D01G395300.2 Wheat cytosol, nucleus, plastid 37.31 25.07
TraesCS5A01G385300.3 Wheat cytosol 37.1 24.93
EER90880 Sorghum cytosol 36.03 24.6
Zm00001d034000_P002 Maize cytosol 36.03 24.42
HORVU5Hr1G094660.1 Barley plastid 22.81 23.67
PGSC0003DMT400077587 Potato nucleus 17.91 17.0
Bra037070.1-P Field mustard nucleus 15.78 14.2
Bra023822.1-P Field mustard nucleus 15.99 12.71
Bra001870.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 14.93 12.57
Bra039958.1-P Field mustard nucleus 15.78 12.46
Protein Annotations
EnsemblPlants:Bra015422.1EnsemblPlants:Bra015422.1-PEnsemblPlantsGene:Bra015422InterPro:Oberon_PHDncoils:CoilPANTHER:PTHR33345
PANTHER:PTHR33345:SF2PFAM:PF07227SEG:segUniParc:UPI00025438F4UniProt:M4DFZ9MapMan:35.2
Description
AT1G05410 (E=8e-212) | unknown protein
Coordinates
chrA10:-:1847571..1849377
Molecular Weight (calculated)
52884.9 Da
IEP (calculated)
4.902
GRAVY (calculated)
-0.491
Length
469 amino acids
Sequence
(BLAST)
001: MDTDNTTTEQ SNREVVPPRL HLRPVRPMES GIGLPYAPEN WPKPGDTWRW KVGPRITGKG TFLDRYLYPP KHLPGLSNTE TLRKGTAFRS RLSLERYIRL
101: AFPDADVRKF FASFSWAVPS TDGMKRSILP VYTSDEDPMD ANVSDIMVCK AGNDKCGSLM PPPSETEPMP CDICCSEPSF CTDCSCILCC KSISVEHEGY
201: SYVKCEAVAS EGRVCGHVAH INCALRAYMA GTVGGSIGLD AEYYCRRCDA RKDLVPHVNR FLEICKTVEY QGDVEKILNL GICVLRGSQR VDAKELLNCI
301: ESTVIKLKCG TSLEDLWNDD TPTIWSDFSE SGEGKDNDDA VQSLQDVTPI EPMPFNHEAE MHKLEEEIRE VLKALREAQE SEYQIAEVRL HAQKECLGDL
401: YRQLEEEKSE LSRRVSGSDA DSLMTNVLKR LDQIRKEVTK LKEMEEVAKG FGRTPKGILE EYFHLTIEE
Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.