Factsheet for TraesCS5B01G390300.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G225200.1
TraesCS2B01G275100.1
TraesCS2B01G597300.1
TraesCS2D01G231100.1
TraesCS4A01G184600.1
TraesCS4B01G134100.1
TraesCS4D01G129000.1
TraesCS6A01G004600.1
TraesCS6B01G009600.1
TraesCS6D01G006600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	TraesCS2A01G225200.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS2B01G275100.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS2D01G231100.1	AT4G21990.1	21798944
AT1G05410.1	TraesCS4A01G184600.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS4B01G134100.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS4D01G129000.1	AT5G49210.1	21798944
AT1G05410.1	TraesCS2B01G597300.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6A01G004600.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6B01G009600.1	AT5G61230.1	21798944
AT1G05410.1	TraesCS6D01G006600.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	98.14	98.14
TraesCS5A01G385300.3	Wheat	cytosol	97.56	97.56
Os03t0747200-01	Rice	cytosol	40.4	62.39
EER90880	Sorghum	cytosol	56.59	57.5
Zm00001d034000_P002	Maize	cytosol	56.73	57.23
PGSC0003DMT400041923	Potato	cytosol	11.32	51.63
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	12.03	48.55
HORVU5Hr1G094660.1	Barley	plastid	28.8	44.47
GSMUA_Achr7P27170_001	Banana	cytosol	31.23	43.78
PGSC0003DMT400082107	Potato	cytosol	28.37	42.49
PGSC0003DMT400092399	Potato	cytosol	14.04	41.7
Solyc09g061580.1.1	Tomato	cytosol	6.88	41.38
Solyc09g061540.1.1	Tomato	cytosol	6.59	39.66
AT1G05410.1	Thale cress	cytosol	26.36	39.07
VIT_05s0020g03600.t01	Wine grape	cytosol	27.36	38.66
PGSC0003DMT400077585	Potato	cytosol	10.74	38.66
CDY10107	Canola	cytosol	25.79	38.22
KRH27646	Soybean	cytosol, nucleus	26.07	38.16
KRH77849	Soybean	nucleus	26.22	38.12
KRG99083	Soybean	nucleus	26.5	37.99
Bra015422.1-P	Field mustard	cytosol	25.07	37.31
CDY47288	Canola	cytosol	25.07	37.16
PGSC0003DMT400059456	Potato	cytosol	18.77	37.01
PGSC0003DMT400077583	Potato	nucleus	19.48	33.5
PGSC0003DMT400090844	Potato	cytosol	5.73	33.33
PGSC0003DMT400077587	Potato	nucleus	13.75	19.43
CDY10650	Canola	nucleus	13.47	16.15
KRH76186	Soybean	nucleus	10.46	16.01
KRH76190	Soybean	nucleus	10.46	16.01
PGSC0003DMT400082110	Potato	nucleus	11.32	15.96
Bra039958.1-P	Field mustard	nucleus	13.04	15.32
CDY10289	Canola	nucleus	12.89	15.2
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.03	15.08
KRH65951	Soybean	plastid	7.45	15.07
AT3G22520.1	Thale cress	nucleus	12.89	15.0
CDX98211	Canola	nucleus	12.61	14.97
CDY34248	Canola	nucleus	12.61	14.89
CDX92945	Canola	nucleus	12.03	14.81
CDY24312	Canola	nucleus	12.03	14.76
Bra023822.1-P	Field mustard	nucleus	12.46	14.75
KRG90260	Soybean	nucleus	9.74	14.47
CDY06487	Canola	nucleus	11.03	14.29
AT4G14840.1	Thale cress	nucleus	11.32	14.23
CDY08296	Canola	nucleus	10.6	14.2
Bra037070.1-P	Field mustard	nucleus	10.6	14.2
VIT_05s0020g03590.t01	Wine grape	nucleus	10.74	13.94
KRH33505	Soybean	nucleus	11.46	13.91
CDY38302	Canola	nucleus	13.47	13.64
VIT_17s0000g05270.t01	Wine grape	nucleus	7.31	11.81
VIT_12s0035g02120.t01	Wine grape	nucleus	5.59	8.8

Protein Annotations

EnsemblPlants:TraesCS5B01G390300.3	EnsemblPlantsGene:TraesCS5B01G390300	InterPro:Myb/SANT-like_dom	InterPro:Oberon_PHD	PANTHER:PTHR31704	PANTHER:PTHR31704:SF65
PFAM:PF07227	PFAM:PF12776	SEG:seg	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5B:-:569547003..569552483

Molecular Weight (calculated)

77671.2 Da

IEP (calculated)

5.922

GRAVY (calculated)

-0.479

Length

698 amino acids

Sequence
(BLAST)

001: MTSISTNQFG SGGSNGGSAS RPHGRDMVIW TEEMNEYLID ALMHQQDIGN RSAEGRFLTG AYESVITGVG ERFGVVIDRS NIKNRLKHVK DMFHECENLF
101: DKQSGIKWNP ATRRFHADPQ VWREFIERKP EAKKWMTKTI DHYDRLLELF GKDRAPPASE NLKGPSKKKA RIEPPKDRPQ RHQTSSNGFE LAIVQGSNQV
201: MDKNELPGAV VAENNIIGEL DLSELCKSEN GLVAIPVHGN AYGKGLPYAP ENWPSPGDQW QWKVGNRIAA GGHWVDRYLA PPSRFRDATG KKTTFTSRLK
301: VGEFIKSNFP DVDPSTFFSM FIWKIPAAEG GIQGGTLQVE RVEPEDGLAD PDGPCKARNK ACNLGKEGFI ESSPAGNCDI CCVHPDFCRT CCCILCGKAV
401: NNSFGGYSYI KCEAVVAENY ICGHVAHLDC ALRIFMAGTV GGSIGLDVQY YCRRCDNKTN LMMHVEKLLE TCRSLGSRSE IEPILNMGLC ILRGSRQLQA
501: KSLEDYMASV MAKVNNGVDL AEVWNMEDGD GMPILNAEES SPPIAGVTVL GADPQYPYLT DPMVDNELQR AAESVPIFIT GNHTEMSLKF EDEIDNSLLE
601: LKKSQEAEYR LAEQKLYSQK DYILSLYRQL ESDRSQLADP NPVSDISSYS VLLSNITNRV EQVKSEEEKF QTMLKISKGF RKAPANIKEH FGLPPPAE

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.