Factsheet for PGSC0003DMT400090844

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 2
nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011414
PGSC0003DMT400013022
PGSC0003DMT400040750
PGSC0003DMT400042488
PGSC0003DMT400051168
PGSC0003DMT400075540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	PGSC0003DMT400013022	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400042488	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400051168	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400040750	AT5G49210.1	21798944
AT1G05410.1	PGSC0003DMT400011414	AT5G61230.1	21798944
AT1G05410.1	PGSC0003DMT400075540	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077585	Potato	cytosol	40.83	25.26
PGSC0003DMT400059456	Potato	cytosol	74.17	25.14
PGSC0003DMT400077583	Potato	nucleus	72.5	21.43
PGSC0003DMT400092399	Potato	cytosol	34.17	17.45
PGSC0003DMT400082107	Potato	cytosol	44.17	11.37
VIT_05s0020g03600.t01	Wine grape	cytosol	44.17	10.73
AT1G05410.1	Thale cress	cytosol	35.83	9.13
PGSC0003DMT400082110	Potato	nucleus	37.5	9.09
CDY10107	Canola	cytosol	34.17	8.7
CDY47288	Canola	cytosol	34.17	8.7
Bra015422.1-P	Field mustard	cytosol	33.33	8.53
KRH27646	Soybean	cytosol, nucleus	33.33	8.39
KRH77849	Soybean	nucleus	33.33	8.33
HORVU5Hr1G094660.1	Barley	plastid	30.83	8.19
GSMUA_Achr7P27170_001	Banana	cytosol	33.33	8.03
KRG99083	Soybean	nucleus	32.5	8.01
PGSC0003DMT400077587	Potato	nucleus	28.33	6.88
Zm00001d034000_P002	Maize	cytosol	33.33	5.78
TraesCS5A01G385300.3	Wheat	cytosol	33.33	5.73
TraesCS5B01G390300.3	Wheat	cytosol	33.33	5.73
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	33.33	5.73
EER90880	Sorghum	cytosol	30.83	5.39
Os03t0747200-01	Rice	cytosol	20.0	5.31
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	5.0	3.47
Solyc06g054180.1.1	Tomato	cytosol	4.17	2.02
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	4.17	1.98
PGSC0003DMT400041923	Potato	cytosol	1.67	1.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400090844	EnsemblPlantsGene:PGSC0003DMG400040415	EntrezGene:107062409	PANTHER:PTHR33345	PGSC:PGSC0003DMG400040415	RefSeq:XP_015168501.1
UniParc:UPI0002951642	UniProt:M1DLB3	MapMan:35.2	:	:	:

Description

Calmodulin protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400040415]

Coordinates

chr6:-:40516462..40516824

Molecular Weight (calculated)

13365.7 Da

IEP (calculated)

9.494

GRAVY (calculated)

-0.726

Length

120 amino acids

Sequence
(BLAST)

001: MSGKEEVGES LALVVYNGSA SRIIEAGLQL YPVSEYESGE GLPYAPVDWP NVGDKWGWRT GKRATNSGTF KDRYLYLPER FQAPKDGKKN AFRSKTSVKK
101: YVQSKYPGMD IDQSLPHSVG

Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)

001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL

Arabidopsis Description

Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.