Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os02t0102600-01 | |
Os07t0509800-01 | |
Os11t0148600-01 | |
Os12t0146400-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G05410.1 | Os07t0509800-01 | AT4G21990.1 | 21798944 |
AT1G05410.1 | Os11t0148600-01 | AT5G49210.1 | 21798944 |
AT1G05410.1 | Os12t0146400-01 | AT5G49210.1 | 21798944 |
AT1G05410.1 | Os02t0102600-01 | AT5G61230.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400041923 | Potato | cytosol | 16.37 | 48.37 |
PGSC0003DMT400017291 | Potato | cytosol, peroxisome, plastid | 17.04 | 44.51 |
EER90880 | Sorghum | cytosol | 62.39 | 41.05 |
Zm00001d034000_P002 | Maize | cytosol | 62.17 | 40.61 |
TraesCS5B01G390300.3 | Wheat | cytosol | 62.39 | 40.4 |
GSMUA_Achr7P27170_001 | Banana | cytosol | 44.47 | 40.36 |
TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 61.73 | 39.97 |
TraesCS5A01G385300.3 | Wheat | cytosol | 60.84 | 39.4 |
PGSC0003DMT400082107 | Potato | cytosol | 39.6 | 38.41 |
Solyc09g061540.1.1 | Tomato | cytosol | 9.51 | 37.07 |
Solyc09g061580.1.1 | Tomato | cytosol | 9.29 | 36.21 |
AT1G05410.1 | Thale cress | cytosol | 36.73 | 35.24 |
CDY10107 | Canola | cytosol | 35.84 | 34.39 |
HORVU5Hr1G094660.1 | Barley | plastid | 34.29 | 34.29 |
CDY47288 | Canola | cytosol | 35.4 | 33.97 |
Bra015422.1-P | Field mustard | cytosol | 35.18 | 33.9 |
VIT_05s0020g03600.t01 | Wine grape | cytosol | 36.28 | 33.2 |
KRH77849 | Soybean | nucleus | 35.18 | 33.12 |
PGSC0003DMT400059456 | Potato | cytosol | 25.66 | 32.77 |
KRH27646 | Soybean | cytosol, nucleus | 34.29 | 32.49 |
PGSC0003DMT400092399 | Potato | cytosol | 16.59 | 31.91 |
KRG99083 | Soybean | nucleus | 34.29 | 31.83 |
PGSC0003DMT400077585 | Potato | cytosol | 12.83 | 29.9 |
PGSC0003DMT400077583 | Potato | nucleus | 25.44 | 28.33 |
PGSC0003DMT400090844 | Potato | cytosol | 5.31 | 20.0 |
PGSC0003DMT400077587 | Potato | nucleus | 16.15 | 14.78 |
KRH65951 | Soybean | plastid | 10.18 | 13.33 |
CDY10650 | Canola | nucleus | 15.93 | 12.37 |
PGSC0003DMT400082110 | Potato | nucleus | 13.27 | 12.12 |
Bra037070.1-P | Field mustard | nucleus | 13.94 | 12.09 |
CDY08296 | Canola | nucleus | 13.94 | 12.09 |
Bra039958.1-P | Field mustard | nucleus | 15.71 | 11.95 |
KRH76190 | Soybean | nucleus | 11.95 | 11.84 |
KRH76186 | Soybean | nucleus | 11.95 | 11.84 |
CDY06487 | Canola | nucleus | 13.72 | 11.5 |
Bra001870.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.16 | 11.49 |
CDY10289 | Canola | nucleus | 15.04 | 11.49 |
CDY24312 | Canola | nucleus | 14.38 | 11.42 |
CDX92945 | Canola | nucleus | 14.16 | 11.29 |
CDX98211 | Canola | nucleus | 14.38 | 11.05 |
Bra023822.1-P | Field mustard | nucleus | 14.16 | 10.85 |
CDY34248 | Canola | nucleus | 14.16 | 10.83 |
AT4G14840.1 | Thale cress | nucleus | 13.27 | 10.81 |
KRG90260 | Soybean | nucleus | 11.06 | 10.64 |
AT3G22520.1 | Thale cress | nucleus | 13.94 | 10.5 |
VIT_05s0020g03590.t01 | Wine grape | nucleus | 11.95 | 10.04 |
CDY38302 | Canola | nucleus | 15.27 | 10.01 |
VIT_17s0000g05270.t01 | Wine grape | nucleus | 8.63 | 9.03 |
KRH33505 | Soybean | nucleus | 11.28 | 8.87 |
VIT_12s0035g02120.t01 | Wine grape | nucleus | 6.86 | 7.0 |
Protein Annotations
EnsemblPlants:Os03t0747200-01 | EnsemblPlantsGene:Os03g0747200 | InterPro:Oberon_PHD | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | PFAM:PF07227 |
ProteinID:BAS86365.1 | SEG:seg | UniParc:UPI000393AEE3 | UniProt:A0A0P0W2X8 | MapMan:35.2 | : |
Description
Protein of unknown function DUF1423, plant domain containing protein. (Os03t0747200-01)
Coordinates
chr3:-:30727013..30731434
Molecular Weight (calculated)
50751.5 Da
IEP (calculated)
5.537
GRAVY (calculated)
-0.405
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: DQWSWKVGNR ASATGHWLDR YLTPPSRFRD ATGKKTSFTS RLKVEEFIKT EFPDMDPNTF FSMFIWKIPA KGHCIQRGGG EVRRVFCPYA RQADPAGPCK
101: ARNNLCKLER EGFIESSPAQ DCDLCCKMPD FCRECCCVFC RRVVDYSFGG YSYIKCEAVL EENKICGHIG HLDCALRTFM AGTVGGCIDL DMQYCCRRCD
201: NKTNLMLHVE KFLEICQSLQ SRDDIEPILN TGLCLVRGSR QTRAKSLESI MRSAMAKLKC GVDLAEVWKM EDNGINSTPS AEVSPATGGV TVLGIQQAPE
301: EDAPPGFPYY VDLADNDLQR AVENLPAYIT EDQHTLSVRF EDSIDHALKE LKRSQEAEYK LAEQKLYSQK DHVLSLYRQL DSERSVLADP MPLADDDGSL
401: YSTLITNVMK RVDQVKSEEE KLKVMLGIAD GFGKTPSGVI QEHFGLPADT AN
101: ARNNLCKLER EGFIESSPAQ DCDLCCKMPD FCRECCCVFC RRVVDYSFGG YSYIKCEAVL EENKICGHIG HLDCALRTFM AGTVGGCIDL DMQYCCRRCD
201: NKTNLMLHVE KFLEICQSLQ SRDDIEPILN TGLCLVRGSR QTRAKSLESI MRSAMAKLKC GVDLAEVWKM EDNGINSTPS AEVSPATGGV TVLGIQQAPE
301: EDAPPGFPYY VDLADNDLQR AVENLPAYIT EDQHTLSVRF EDSIDHALKE LKRSQEAEYK LAEQKLYSQK DHVLSLYRQL DSERSVLADP MPLADDDGSL
401: YSTLITNVMK RVDQVKSEEE KLKVMLGIAD GFGKTPSGVI QEHFGLPADT AN
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.