Factsheet for PGSC0003DMT400077585

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011414
PGSC0003DMT400013022
PGSC0003DMT400040750
PGSC0003DMT400042488
PGSC0003DMT400051168
PGSC0003DMT400075540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	PGSC0003DMT400013022	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400042488	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400051168	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400040750	AT5G49210.1	21798944
AT1G05410.1	PGSC0003DMT400011414	AT5G61230.1	21798944
AT1G05410.1	PGSC0003DMT400075540	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092399	Potato	cytosol	61.86	51.06
PGSC0003DMT400041923	Potato	cytosol	38.14	48.37
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	38.14	42.77
PGSC0003DMT400059456	Potato	cytosol	77.32	42.37
Solyc09g061360.1.1	Tomato	nucleus	22.68	42.31
PGSC0003DMT400090844	Potato	cytosol	25.26	40.83
Solyc10g018690.1.1	Tomato	cytosol	17.01	38.82
Solyc06g054190.1.1	Tomato	cytosol	25.77	37.88
Solyc06g054170.1.1	Tomato	cytosol	25.77	37.88
PGSC0003DMT400077583	Potato	nucleus	72.68	34.73
Solyc06g054210.1.1	Tomato	nucleus	22.68	33.33
Solyc09g061490.1.1	Tomato	nucleus	21.13	31.06
PGSC0003DMT400082107	Potato	cytosol	53.09	22.1
PGSC0003DMT400077587	Potato	nucleus	49.48	19.43
VIT_05s0020g03600.t01	Wine grape	cytosol	47.94	18.83
CDY10107	Canola	cytosol	43.81	18.05
Bra015422.1-P	Field mustard	cytosol	43.3	17.91
CDY47288	Canola	cytosol	43.3	17.83
AT1G05410.1	Thale cress	cytosol	41.24	16.99
GSMUA_Achr7P27170_001	Banana	cytosol	42.27	16.47
KRH77849	Soybean	nucleus	40.72	16.46
KRH27646	Soybean	cytosol, nucleus	40.21	16.35
KRG99083	Soybean	nucleus	39.18	15.61
HORVU5Hr1G094660.1	Barley	plastid	34.02	14.6
Os03t0747200-01	Rice	cytosol	29.9	12.83
TraesCS5B01G390300.3	Wheat	cytosol	38.66	10.74
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	37.63	10.46
TraesCS5A01G385300.3	Wheat	cytosol	37.11	10.32
Zm00001d034000_P002	Maize	cytosol	36.6	10.26
EER90880	Sorghum	cytosol	34.02	9.61
PGSC0003DMT400082110	Potato	nucleus	17.01	6.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400077585	EnsemblPlantsGene:PGSC0003DMG400030175	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
PGSC:PGSC0003DMG400030175	UniParc:UPI0002957FC2	UniProt:M1CYL2	MapMan:35.2	:	:

Description

CDPK adapter protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030175]

Coordinates

chr9:+:43358605..43359881

Molecular Weight (calculated)

21555.7 Da

IEP (calculated)

7.893

GRAVY (calculated)

-0.203

Length

194 amino acids

Sequence
(BLAST)

001: MSAKDEVGES RAHVVYNGSA SRINEIRFQL YLVSEYDSGE GLPYAPVDWP NAGDKWGWRT GKRVTSLDGY ICGHVYHIYC ALRAYMAGTV GESINLDAQY
101: LCRYCDSRMD LVPHALKLLN TCTYVASRAD IGKISNFDIC IMRGSPKRSG KELLHHIESI KAKTKGVCIQ DASKKDSCVD SIGNFYALLS SCFC

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.