Factsheet for Solyc06g054170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g054190.1.1	Tomato	cytosol	93.94	93.94
Solyc06g054210.1.1	Tomato	nucleus	82.58	82.58
Solyc09g061490.1.1	Tomato	nucleus	78.03	78.03
Solyc09g061360.1.1	Tomato	nucleus	57.58	73.08
Solyc09g059860.1.1	Tomato	cytosol	36.36	59.26
Solyc10g018690.1.1	Tomato	cytosol	34.09	52.94
Solyc09g059740.1.1	Tomato	cytosol	63.64	30.11
Solyc06g054230.2.1	Tomato	cytosol	74.24	29.88
Solyc09g059890.1.1	Tomato	cytosol	46.21	27.6
PGSC0003DMT400077585	Potato	cytosol	37.88	25.77
Solyc09g061260.1.1	Tomato	cytosol	64.39	24.71
Solyc09g060010.1.1	Tomato	extracellular	20.45	17.88
Solyc09g059870.1.1	Tomato	cytosol	16.67	16.92
Solyc09g059910.1.1	Tomato	extracellular	25.76	12.88
AT1G05410.1	Thale cress	cytosol	39.39	11.04
CDY47288	Canola	cytosol	38.64	10.83
CDY10107	Canola	cytosol	38.64	10.83
Bra015422.1-P	Field mustard	cytosol	37.88	10.66
VIT_05s0020g03600.t01	Wine grape	cytosol	39.39	10.53
KRH77849	Soybean	nucleus	37.12	10.21
KRH27646	Soybean	cytosol, nucleus	36.36	10.06
KRG99083	Soybean	nucleus	35.61	9.65
Solyc09g082130.2.1	Tomato	nucleus	15.15	4.83
Solyc09g061500.1.1	Tomato	cytosol	4.55	4.8
Solyc09g061580.1.1	Tomato	cytosol	3.79	4.31
Solyc09g061370.1.1	Tomato	cytosol	5.3	3.61
Solyc09g061540.1.1	Tomato	cytosol	3.03	3.45
Solyc06g054200.1.1	Tomato	cytosol	5.3	3.17
Solyc09g061560.1.1	Tomato	mitochondrion	3.79	2.98
Solyc06g054180.1.1	Tomato	cytosol	3.79	2.02
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	3.79	1.98
Solyc09g060060.1.1	Tomato	cytosol	0.76	1.67
Solyc09g059900.1.1	Tomato	cytosol	0.76	1.52
Solyc09g060020.1.1	Tomato	cytosol	0.76	1.33
Solyc09g061600.1.1	Tomato	cytosol	0.76	1.27
Solyc09g082140.2.1	Tomato	cytosol, nucleus	3.03	1.21
Solyc09g061590.1.1	Tomato	cytosol	0.76	1.01

Protein Annotations

EnsemblPlants:Solyc06g054170.1.1

EnsemblPlantsGene:Solyc06g054170.1

PANTHER:PTHR33345

UniParc:UPI0002765985

UniProt:K4C6A4

MapMan:35.2

Description

No Description!

Coordinates

chr6:-:36980527..36980925

Molecular Weight (calculated)

14847.4 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.671

Length

132 amino acids

Sequence
(BLAST)

001: MSANEEVVES LALVVYNESA STINETGLQL YPVSENECGE GLPYAPMDWP NVGDKWGWRT GKRATNKGTF KDRYLYLPER FQAPKNGKEN AFRSKASVKK
101: YLQSAYPGMD INRFFASFSW MIPSKQSASS KG

Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)

001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL

Arabidopsis Description

Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.