Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 5
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g060020.1.1 | Tomato | cytosol | 25.83 | 52.0 |
| Solyc09g060060.1.1 | Tomato | cytosol | 17.88 | 45.0 |
| Solyc09g059900.1.1 | Tomato | cytosol | 18.54 | 42.42 |
| Solyc09g061600.1.1 | Tomato | cytosol | 19.87 | 37.97 |
| Solyc09g059870.1.1 | Tomato | cytosol | 32.45 | 37.69 |
| Solyc09g061590.1.1 | Tomato | cytosol | 20.53 | 31.31 |
| Solyc09g059890.1.1 | Tomato | cytosol | 43.71 | 29.86 |
| Solyc09g061260.1.1 | Tomato | cytosol | 52.32 | 22.97 |
| Solyc09g061490.1.1 | Tomato | nucleus | 19.87 | 22.73 |
| Solyc06g054210.1.1 | Tomato | nucleus | 18.54 | 21.21 |
| Solyc06g054170.1.1 | Tomato | cytosol | 17.88 | 20.45 |
| Solyc06g054230.2.1 | Tomato | cytosol | 44.37 | 20.43 |
| Solyc06g054190.1.1 | Tomato | cytosol | 17.22 | 19.7 |
| Solyc09g059910.1.1 | Tomato | extracellular | 31.13 | 17.8 |
| Solyc09g059740.1.1 | Tomato | cytosol | 32.45 | 17.56 |
| Solyc09g061370.1.1 | Tomato | cytosol | 22.52 | 17.53 |
| Solyc06g054200.1.1 | Tomato | cytosol | 23.18 | 15.84 |
| Solyc09g059860.1.1 | Tomato | cytosol | 7.95 | 14.81 |
| Solyc09g061360.1.1 | Tomato | nucleus | 9.93 | 14.42 |
| Solyc09g061500.1.1 | Tomato | cytosol | 11.26 | 13.6 |
| Solyc06g054180.1.1 | Tomato | cytosol | 21.85 | 13.36 |
| Solyc06g054160.1.1 | Tomato | cytosol, peroxisome, plastid | 21.85 | 13.1 |
| Solyc09g061560.1.1 | Tomato | mitochondrion | 13.24 | 11.9 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 36.42 | 11.13 |
| KRG99083 | Soybean | nucleus | 33.11 | 10.27 |
| Bra015422.1-P | Field mustard | cytosol | 31.13 | 10.02 |
| CDY47288 | Canola | cytosol | 31.13 | 9.98 |
| CDY10107 | Canola | cytosol | 30.46 | 9.77 |
| KRH27646 | Soybean | cytosol, nucleus | 29.8 | 9.43 |
| Solyc10g018690.1.1 | Tomato | cytosol | 5.3 | 9.41 |
| KRH77849 | Soybean | nucleus | 29.8 | 9.38 |
| AT1G05410.1 | Thale cress | cytosol | 28.48 | 9.13 |
| Solyc09g082140.2.1 | Tomato | cytosol, nucleus | 19.87 | 9.06 |
| Solyc09g082130.2.1 | Tomato | nucleus | 12.58 | 4.59 |
| Solyc09g061540.1.1 | Tomato | cytosol | 1.32 | 1.72 |
| Solyc09g061580.1.1 | Tomato | cytosol | 1.32 | 1.72 |
Protein Annotations
| EnsemblPlants:Solyc09g060010.1.1 | EnsemblPlantsGene:Solyc09g060010.1 | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | UniParc:UPI000276B947 | UniProt:K4CTT4 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:57355972..57357008
Molecular Weight (calculated)
17242.9 Da
IEP (calculated)
8.746
GRAVY (calculated)
-0.158
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHYFYGFGL LFESIELEIS SQMSAKEEML VISGFGGQGK EFQVQAPLEI HSYLPKHFKV PKGGKISVEK YLHSEYATMD INQFSSSFSR MIPSKKSPSS
101: KDAQYLCRYC DSRMYLVPHV LNLIKTYTYV SSRADIEKIL NVGICILRGS Q
101: KDAQYLCRYC DSRMYLVPHV LNLIKTYTYV SSRADIEKIL NVGICILRGS Q
001: MDSMDIDQSN IGESPHLLLR PVGPRISGKG YFVDRYLYPP KYLPGLDTEI LRKNKVFRSR LSLQRYIRVH FPEADVQKFF ASFSWSIPCR DGQGVLPQKQ
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.