Factsheet for Solyc09g082130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082110	Potato	nucleus	76.57	64.04
VIT_05s0020g03590.t01	Wine grape	nucleus	32.85	25.28
Bra037070.1-P	Field mustard	nucleus	28.99	23.03
CDY08296	Canola	nucleus	28.99	23.03
CDY06487	Canola	nucleus	28.74	22.08
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.47	21.9
VIT_12s0035g02120.t01	Wine grape	nucleus	23.43	21.9
CDX98211	Canola	nucleus	30.68	21.6
Bra023822.1-P	Field mustard	nucleus	30.43	21.36
CDY34248	Canola	nucleus	30.43	21.32
CDX92945	Canola	nucleus	28.99	21.16
CDY24312	Canola	nucleus	28.74	20.91
KRH65951	Soybean	plastid	17.39	20.87
KRH76186	Soybean	nucleus	22.95	20.83
KRH76190	Soybean	nucleus	22.95	20.83
CDY10650	Canola	nucleus	28.99	20.62
KRG90260	Soybean	nucleus	22.95	20.21
CDY10289	Canola	nucleus	28.74	20.1
Bra039958.1-P	Field mustard	nucleus	28.26	19.7
AT4G14840.1	Thale cress	nucleus	26.33	19.64
AT3G22520.1	Thale cress	nucleus	28.02	19.33
CDY38302	Canola	nucleus	29.71	17.85
KRH33505	Soybean	nucleus	22.95	16.52
VIT_17s0000g05270.t01	Wine grape	nucleus	15.94	15.28
Solyc06g054170.1.1	Tomato	cytosol	4.83	15.15
Solyc09g059870.1.1	Tomato	cytosol	4.59	14.62
Solyc06g054210.1.1	Tomato	nucleus	4.35	13.64
Solyc09g061490.1.1	Tomato	nucleus	4.35	13.64
Solyc06g054190.1.1	Tomato	cytosol	4.35	13.64
Solyc09g060060.1.1	Tomato	cytosol	1.93	13.33
Solyc09g060010.1.1	Tomato	extracellular	4.59	12.58
Solyc09g060020.1.1	Tomato	cytosol	2.17	12.0
Solyc09g061600.1.1	Tomato	cytosol	2.17	11.39
Solyc06g054230.2.1	Tomato	cytosol	8.94	11.28
Solyc09g059900.1.1	Tomato	cytosol	1.69	10.61
Solyc09g059890.1.1	Tomato	cytosol	5.56	10.41
Solyc09g061260.1.1	Tomato	cytosol	8.45	10.17
Solyc09g082140.2.1	Tomato	cytosol, nucleus	7.49	9.37
Solyc09g059740.1.1	Tomato	cytosol	6.28	9.32
Solyc09g061370.1.1	Tomato	cytosol	4.35	9.28
Solyc06g054200.1.1	Tomato	cytosol	4.59	8.6
Solyc09g061560.1.1	Tomato	mitochondrion	3.38	8.33
Solyc09g061590.1.1	Tomato	cytosol	1.69	7.07
Solyc09g061540.1.1	Tomato	cytosol	1.93	6.9
Solyc09g059910.1.1	Tomato	extracellular	4.11	6.44
Solyc06g054180.1.1	Tomato	cytosol	3.62	6.07
Solyc09g061580.1.1	Tomato	cytosol	1.69	6.03
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	3.14	5.16
Solyc09g061360.1.1	Tomato	nucleus	1.21	4.81
Solyc09g061500.1.1	Tomato	cytosol	1.45	4.8
Solyc10g018690.1.1	Tomato	cytosol	0.0	0.0
Solyc09g059860.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g082130.2.1	EnsemblPlantsGene:Solyc09g082130.2	ncoils:Coil	PANTHER:PTHR33345	PANTHER:PTHR33345:SF3	SEG:seg
UniParc:UPI000276BF61	UniProt:K4CVJ0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr9:+:67960413..67964180

Molecular Weight (calculated)

45898.5 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.547

Length

414 amino acids

Sequence
(BLAST)

001: MWFLSKLSLK TYLKTNYPET DTNAFFSSFV WEVPADFNAF FTSPEGKAEP LPISQSPNPG NAHKIGQSPN SGEAHKTGKS ANSKKVRKTG EGGGTSSRKR
101: KPNMKQEGRY LWKKVNSNIT NTEVSNALLV KEESVENNEA PNKVQSSLFD SPVSDDNATI SPLNFHQELA TPLKDSPLTV TPEDFDNYIS SLDDILHLPI
201: HGSPSIISGS CGEKEMTGAR KKLVNLLRIG FPALFNSDRL TEVAALSLEL QNEPNLSDRE LSMLKLVQEI PLASKDFLEA KRVTKQADKF FADLEAKVTH
301: VSTLRDDYNA SKKEIALLEV EDMSTSSAIQ EIDDKIAILQ SRRAALAKVA NRTNKKIAEA KSKQRMVMGH LPKMVDEIQV ANSESSEWKL KKQKSAEKEV
401: EILTKFAPLK GFSI

Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)

001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL

Arabidopsis Description

Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.