Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08296 | Canola | nucleus | 86.09 | 89.06 |
| AT4G14840.1 | Thale cress | nucleus | 71.61 | 69.55 |
| CDX98211 | Canola | nucleus | 64.56 | 59.18 |
| CDY24312 | Canola | nucleus | 61.78 | 58.52 |
| CDY34248 | Canola | nucleus | 63.82 | 58.21 |
| CDX92945 | Canola | nucleus | 61.04 | 58.02 |
| CDY10289 | Canola | nucleus | 62.15 | 56.59 |
| CDY10650 | Canola | nucleus | 60.48 | 56.01 |
| CDY38302 | Canola | nucleus | 60.67 | 47.46 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 32.47 | 32.53 |
| KRH76190 | Soybean | nucleus | 26.53 | 31.36 |
| KRH76186 | Soybean | nucleus | 26.53 | 31.36 |
| KRG90260 | Soybean | nucleus | 26.16 | 30.0 |
| PGSC0003DMT400082110 | Potato | nucleus | 27.09 | 29.49 |
| Solyc09g082130.2.1 | Tomato | nucleus | 22.08 | 28.74 |
| KRH65951 | Soybean | plastid | 17.44 | 27.25 |
| KRH33505 | Soybean | nucleus | 26.16 | 24.52 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 19.11 | 23.25 |
| CDY47288 | Canola | cytosol | 13.36 | 15.29 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 14.1 | 15.26 |
| CDY10107 | Canola | cytosol | 12.99 | 14.86 |
| Os03t0747200-01 | Rice | cytosol | 11.5 | 13.72 |
| HORVU5Hr1G094660.1 | Barley | plastid | 10.39 | 12.39 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 14.66 | 11.32 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 14.66 | 11.32 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 14.29 | 11.03 |
| EER90880 | Sorghum | cytosol | 13.91 | 10.92 |
| Zm00001d034000_P002 | Maize | cytosol | 13.91 | 10.84 |
Protein Annotations
| EnsemblPlants:CDY06487 | EnsemblPlantsGene:GSBRNA2T00122580001 | ncoils:Coil | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | ProteinID:CDY06487 |
| ProteinID:CDY06487.1 | SEG:seg | UniParc:UPI0004EBBC6B | MapMan:35.2 | : | : |
Description
BnaC06g11570D
Coordinates
chrLK031970:-:756581..758506
Molecular Weight (calculated)
60554.0 Da
IEP (calculated)
5.922
GRAVY (calculated)
-0.775
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTDQEMSQN PPGFDGEQVP VSNHNFGENK LFNRGGDGDG DDHVNRSSFT FTPGETDLNQ LPAIPPVSSG QGLPFAPVDF PSPGDVWTWR VGRRVSATGF
101: HKDRFLILPE RLKMKNAPKS FATKNTLSRY LETNFPEMDV IAFFASFSWN IPALFQPADR VDAASLFEET NKEGENVEDA KNEGSTSRYS QRKRKQVQTQ
201: TYEPVQVKPK ASGRKKKEAT KQKPSSSSRR STRQKQGDMV DLEEEKENEA AATKPGNRMK KRRGSAAEKQ EDAPIPHVYV SPMNGVLAVS HSPVEINPEE
301: FDNYLNTLEN LLQQQPSEAG QESSSSSLPV TASSPVKEYE WAEARMKLSS LLDKDFSSLL MSNEAAELAA LATKLKKDPS LSAEEIVRLK LIEEIPTFSQ
401: VFQENKNVIV EADRFFSALE LNKAKVASLK YEYSDLKDKL GNIQTEVDAN SETIRQIDDQ IAQLQARRTE LTRWISKKEK EKVDLSYGQK MVANSIPKVV
501: QEVQAANSKK PEWVMKKENA VKREEEILNK FASLKGFYL
101: HKDRFLILPE RLKMKNAPKS FATKNTLSRY LETNFPEMDV IAFFASFSWN IPALFQPADR VDAASLFEET NKEGENVEDA KNEGSTSRYS QRKRKQVQTQ
201: TYEPVQVKPK ASGRKKKEAT KQKPSSSSRR STRQKQGDMV DLEEEKENEA AATKPGNRMK KRRGSAAEKQ EDAPIPHVYV SPMNGVLAVS HSPVEINPEE
301: FDNYLNTLEN LLQQQPSEAG QESSSSSLPV TASSPVKEYE WAEARMKLSS LLDKDFSSLL MSNEAAELAA LATKLKKDPS LSAEEIVRLK LIEEIPTFSQ
401: VFQENKNVIV EADRFFSALE LNKAKVASLK YEYSDLKDKL GNIQTEVDAN SETIRQIDDQ IAQLQARRTE LTRWISKKEK EKVDLSYGQK MVANSIPKVV
501: QEVQAANSKK PEWVMKKENA VKREEEILNK FASLKGFYL
001: MDMDQEIGQN SPGFDGESVV SMSNRSKETE PVPVENDYYR ENGFNSDGDG DDVKVNGDRS SFTDLNQLPA IPPASSGQGL PFAPVDFPSP GDVWTWRVGR
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
Arabidopsis Description
At4g14840 [Source:UniProtKB/TrEMBL;Acc:O23339]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.