Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G003890.1 | |
| HORVU4Hr1G025670.1 | |
| HORVU6Hr1G001980.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05410.1 | HORVU0Hr1G003890.1 | AT4G21990.1 | 21798944 |
| AT1G05410.1 | HORVU4Hr1G025670.1 | AT5G49210.1 | 21798944 |
| AT1G05410.1 | HORVU6Hr1G001980.1 | AT5G61230.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041923 | Potato | cytosol | 14.82 | 43.79 |
| PGSC0003DMT400017291 | Potato | cytosol, peroxisome, plastid | 15.27 | 39.88 |
| Os03t0747200-01 | Rice | cytosol | 34.29 | 34.29 |
| PGSC0003DMT400077585 | Potato | cytosol | 14.6 | 34.02 |
| PGSC0003DMT400092399 | Potato | cytosol | 17.04 | 32.77 |
| PGSC0003DMT400059456 | Potato | cytosol | 25.0 | 31.92 |
| PGSC0003DMT400090844 | Potato | cytosol | 8.19 | 30.83 |
| Solyc09g061580.1.1 | Tomato | cytosol | 7.52 | 29.31 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 44.47 | 28.8 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 44.03 | 28.51 |
| Solyc09g061540.1.1 | Tomato | cytosol | 7.3 | 28.45 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 43.81 | 28.37 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 30.53 | 27.71 |
| PGSC0003DMT400077583 | Potato | nucleus | 24.78 | 27.59 |
| PGSC0003DMT400082107 | Potato | cytosol | 28.1 | 27.25 |
| EER90880 | Sorghum | cytosol | 39.16 | 25.76 |
| Zm00001d034000_P002 | Maize | cytosol | 38.72 | 25.29 |
| KRH27646 | Soybean | cytosol, nucleus | 25.66 | 24.32 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 26.55 | 24.29 |
| KRH77849 | Soybean | nucleus | 25.22 | 23.75 |
| KRG99083 | Soybean | nucleus | 25.22 | 23.41 |
| CDY10107 | Canola | cytosol | 23.89 | 22.93 |
| Bra015422.1-P | Field mustard | cytosol | 23.67 | 22.81 |
| CDY47288 | Canola | cytosol | 23.67 | 22.72 |
| AT1G05410.1 | Thale cress | cytosol | 23.67 | 22.72 |
| KRH76186 | Soybean | nucleus | 13.05 | 12.94 |
| KRH76190 | Soybean | nucleus | 13.05 | 12.94 |
| PGSC0003DMT400082110 | Potato | nucleus | 13.94 | 12.73 |
| PGSC0003DMT400077587 | Potato | nucleus | 13.72 | 12.55 |
| CDX92945 | Canola | nucleus | 15.04 | 11.99 |
| KRG90260 | Soybean | nucleus | 12.39 | 11.91 |
| KRH65951 | Soybean | plastid | 9.07 | 11.88 |
| CDY10650 | Canola | nucleus | 15.27 | 11.86 |
| Bra001870.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.6 | 11.85 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 13.94 | 11.71 |
| CDY10289 | Canola | nucleus | 15.27 | 11.66 |
| Bra039958.1-P | Field mustard | nucleus | 15.27 | 11.62 |
| CDY24312 | Canola | nucleus | 14.38 | 11.42 |
| CDY08296 | Canola | nucleus | 13.05 | 11.32 |
| Bra037070.1-P | Field mustard | nucleus | 13.05 | 11.32 |
| CDX98211 | Canola | nucleus | 14.38 | 11.05 |
| Bra023822.1-P | Field mustard | nucleus | 13.94 | 10.68 |
| CDY34248 | Canola | nucleus | 13.94 | 10.66 |
| AT4G14840.1 | Thale cress | nucleus | 13.05 | 10.63 |
| AT3G22520.1 | Thale cress | nucleus | 13.94 | 10.5 |
| KRH33505 | Soybean | nucleus | 13.27 | 10.43 |
| CDY06487 | Canola | nucleus | 12.39 | 10.39 |
| CDY38302 | Canola | nucleus | 15.04 | 9.87 |
| VIT_17s0000g05270.t01 | Wine grape | nucleus | 8.41 | 8.8 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 7.52 | 7.67 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G094660.1 | EnsemblPlantsGene:HORVU5Hr1G094660 | InterPro:Oberon_PHD | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF2 | PFAM:PF07227 |
| SEG:seg | UniParc:UPI000B485EC2 | UniProt:A0A287SBU4 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:-:596676174..596684756
Molecular Weight (calculated)
50760.4 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.381
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: HIPPFSRSRV RASAPSLEEP PPPPPPPQAA ASNINQPAPP LLQGASLIRS PPVIQQRGAS SAPAPELAVS SPTSRRRRPQ DCFPKLATSS CFLAYSARPL
101: SMASSNIKVC DGLVIGKNRP KELYLSEMCK IEDDPIAIPI EANAYGKGLP YAPINWPCLG DEWKWKVGKR YYTGHWHDRY LIPPSRFRDA NGRRILFRSK
201: KHVEEFIKRE FPDTDPNTFF SMFIWKIPCE GSVIQRGTRQ LRGPKLENLL ANPTKEKLRF IKSSLAHDYD MFCTMPNFRA ECCCIICGMV VDYSCGGYNY
301: MKCEATIGEN TKCGHVGHLH CALKSSMAGT VGGGIFLDME YYCRWCDNKT NLMMHVEKLL ETCRPLQSKE KIKTILDMGL SILRGSRKEQ AKILENYMGS
401: VMAKINDGVD LNEVWKKEDC DGVATLDAEE IFPPTTTTVM LRASHYPYLN SL
101: SMASSNIKVC DGLVIGKNRP KELYLSEMCK IEDDPIAIPI EANAYGKGLP YAPINWPCLG DEWKWKVGKR YYTGHWHDRY LIPPSRFRDA NGRRILFRSK
201: KHVEEFIKRE FPDTDPNTFF SMFIWKIPCE GSVIQRGTRQ LRGPKLENLL ANPTKEKLRF IKSSLAHDYD MFCTMPNFRA ECCCIICGMV VDYSCGGYNY
301: MKCEATIGEN TKCGHVGHLH CALKSSMAGT VGGGIFLDME YYCRWCDNKT NLMMHVEKLL ETCRPLQSKE KIKTILDMGL SILRGSRKEQ AKILENYMGS
401: VMAKINDGVD LNEVWKKEDC DGVATLDAEE IFPPTTTTVM LRASHYPYLN SL
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
Arabidopsis Description
At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.