Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76186 | Soybean | nucleus | 18.06 | 17.11 |
| KRH76190 | Soybean | nucleus | 18.06 | 17.11 |
| KRG90260 | Soybean | nucleus | 18.52 | 17.02 |
| Solyc09g082130.2.1 | Tomato | nucleus | 15.28 | 15.94 |
| KRH65951 | Soybean | plastid | 12.5 | 15.65 |
| VIT_05s0020g03590.t01 | Wine grape | nucleus | 19.44 | 15.61 |
| PGSC0003DMT400082110 | Potato | nucleus | 17.36 | 15.15 |
| KRH33505 | Soybean | nucleus | 18.52 | 13.91 |
| VIT_12s0035g02120.t01 | Wine grape | nucleus | 11.57 | 11.29 |
| VIT_05s0020g03600.t01 | Wine grape | cytosol | 11.57 | 10.12 |
| GSMUA_Achr7P27170_001 | Banana | cytosol | 10.88 | 9.44 |
| Os03t0747200-01 | Rice | cytosol | 9.03 | 8.63 |
| HORVU5Hr1G094660.1 | Barley | plastid | 8.8 | 8.41 |
| EER90880 | Sorghum | cytosol | 12.5 | 7.86 |
| Zm00001d034000_P002 | Maize | cytosol | 12.5 | 7.8 |
| TraesCS5B01G390300.3 | Wheat | cytosol | 11.81 | 7.31 |
| TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 11.57 | 7.16 |
| TraesCS5A01G385300.3 | Wheat | cytosol | 11.34 | 7.02 |
Protein Annotations
| ArrayExpress:VIT_17s0000g05270 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g05270.t01 | EnsemblPlantsGene:VIT_17s0000g05270 | EntrezGene:100265622 | EntrezGene:LOC100265622 |
| PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 | ProteinID:CCB43139 | ProteinID:CCB43139.1 | RefSeq:XP_010663445.1 | SEG:seg |
| UniParc:UPI00015CC2C6 | UniProt:F6GTD0 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr17:+:5761030..5764757
Molecular Weight (calculated)
47930.0 Da
IEP (calculated)
4.826
GRAVY (calculated)
-0.358
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDPGKNVAP EFEIPDQIEE EDSDNLSGNG SAEEKETNPN IELFAADRKR KAAATVQVLA YGLNCSVEEK RKRKVVQARK KLLDRPVGWS PFGLPGWDSA
101: KTRTDSRAII KDLVKTIPLP YQAKDKAEVR GRRNKGKRSI EIPQGGKLKS AASVGTYDHS SLTTRGAPTP VLDVPVDVST EISFAEFNEF FSPTEFACAE
201: TLATVAEVPI LYNPEGAVAE DPICYNQGGD YEEARNRLSA ILSLDFDHLL LDPDTLARTL HLSTALKENA GFNPFQLAML KMVEEIPLLS DDIVEFKDLN
301: MEIKTLFSEL ESNILRVACS WTKYRDSIIT LSDLQVDVSA NLYAARMLDH QILQLQTRRV ELANLLESKK NAMIELISAQ TKIAGTLPKT SDDEQVEAAD
401: LKKPGGSAKK KPIIDNWAKI LDGFFPLKDF IF
101: KTRTDSRAII KDLVKTIPLP YQAKDKAEVR GRRNKGKRSI EIPQGGKLKS AASVGTYDHS SLTTRGAPTP VLDVPVDVST EISFAEFNEF FSPTEFACAE
201: TLATVAEVPI LYNPEGAVAE DPICYNQGGD YEEARNRLSA ILSLDFDHLL LDPDTLARTL HLSTALKENA GFNPFQLAML KMVEEIPLLS DDIVEFKDLN
301: MEIKTLFSEL ESNILRVACS WTKYRDSIIT LSDLQVDVSA NLYAARMLDH QILQLQTRRV ELANLLESKK NAMIELISAQ TKIAGTLPKT SDDEQVEAAD
401: LKKPGGSAKK KPIIDNWAKI LDGFFPLKDF IF
001: MDMDQEIGQN SPGFDGESVV SMSNRSKETE PVPVENDYYR ENGFNSDGDG DDVKVNGDRS SFTDLNQLPA IPPASSGQGL PFAPVDFPSP GDVWTWRVGR
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
Arabidopsis Description
At4g14840 [Source:UniProtKB/TrEMBL;Acc:O23339]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.