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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_05s0020g03590.t01 Wine grape nucleus 57.56 47.4
Solyc09g082130.2.1 Tomato nucleus 21.9 23.43
PGSC0003DMT400082110 Potato nucleus 24.15 21.62
CDY08296 Canola nucleus 22.57 19.19
CDY06487 Canola nucleus 23.25 19.11
Bra037070.1-P Field mustard nucleus 22.35 19.0
Bra001870.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 21.9 17.41
Bra023822.1-P Field mustard nucleus 22.35 16.78
AT4G14840.1 Thale cress nucleus 20.99 16.76
CDX92945 Canola nucleus 21.44 16.75
CDY24312 Canola nucleus 21.22 16.52
CDY34248 Canola nucleus 21.9 16.41
AT3G22520.1 Thale cress nucleus 22.12 16.33
CDX98211 Canola nucleus 21.67 16.33
CDY10650 Canola nucleus 21.22 16.15
CDY10289 Canola nucleus 20.77 15.54
Bra039958.1-P Field mustard nucleus 20.54 15.32
CDY38302 Canola nucleus 21.44 13.79
VIT_17s0000g05270.t01 Wine grape nucleus 11.29 11.57
VIT_05s0020g03600.t01 Wine grape cytosol 10.16 9.11
GSMUA_Achr7P27170_001 Banana cytosol 8.58 7.63
HORVU5Hr1G094660.1 Barley plastid 7.67 7.52
Os03t0747200-01 Rice cytosol 7.0 6.86
EER90880 Sorghum cytosol 9.48 6.11
Zm00001d034000_P002 Maize cytosol 9.03 5.78
TraesCS5B01G390300.3 Wheat cytosol 8.8 5.59
TraesCS5A01G385300.3 Wheat cytosol 8.58 5.44
TraesCS5D01G395300.2 Wheat cytosol, nucleus, plastid 8.58 5.44
Protein Annotations
Gene3D:2.40.330.10MapMan:35.1InterPro:B3_DNA-bdProteinID:CBI29609ProteinID:CBI29609.3ncoils:Coil
UniProt:D7TGI7InterPro:DNA-bd_pseudobarrel_sfEMBL:FN595990GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR003340InterPro:IPR015300PFAM:PF02362PFscan:PS50863PANTHER:PTHR33345PANTHER:PTHR33345:SF3
SMART:SM01019SUPFAM:SSF101936UniParc:UPI0001BE36B1ArrayExpress:VIT_12s0035g02120EnsemblPlantsGene:VIT_12s0035g02120EnsemblPlants:VIT_12s0035g02120.t01
Description
No Description!
Coordinates
chr12:+:22479367..22483378
Molecular Weight (calculated)
49931.1 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.434
Length
443 amino acids
Sequence
(BLAST)
001: MSSPPRELPE FCNVYLPEYS SDRLLIPTAF LGHFNGVVPE KAILREFSGR VWLVEVGLIG KDVYFLNGWQ RFRTDNSLEE GVFLVFRYDG SHIFDFKLFG
101: RNQCEKIETD NDQLQAQMQE TEPFQQLVTP SSITPWVCPQ PGKEVDQEVG KKSPFTLPRR KRKAAKLPVT TIYRPRTRQS TKWFTRFNAD DTGIIDLCSL
201: SKESETSDPT NQDFRSTNDF KCDQVSSHQV PISPGGILLA DCNSPVSCGA PCTELTQGSE DNMIPEDFDN FVDSLDDMLA QPLPEALLSP SATDNYQASE
301: DEIAEARIKL SSLLAMDFHL LVSSKDLKEL ALLSSKLQKD PSLDADQLSK LKLIEEIPVT GKVFLEAMQI KEEVNKFFAD LTSSMDKATS LRNEYNASKE
401: DIAMLQVDIN SSLSTLEEID DQIAKLQSRR AELSTALKIK RRK
Best Arabidopsis Sequence Match ( AT3G22520.1 )
(BLAST)
001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
Arabidopsis Description
Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.