Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_05s0020g03590.t01 | Wine grape | nucleus | 57.56 | 47.4 |
Solyc09g082130.2.1 | Tomato | nucleus | 21.9 | 23.43 |
PGSC0003DMT400082110 | Potato | nucleus | 24.15 | 21.62 |
CDY08296 | Canola | nucleus | 22.57 | 19.19 |
CDY06487 | Canola | nucleus | 23.25 | 19.11 |
Bra037070.1-P | Field mustard | nucleus | 22.35 | 19.0 |
Bra001870.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.9 | 17.41 |
Bra023822.1-P | Field mustard | nucleus | 22.35 | 16.78 |
AT4G14840.1 | Thale cress | nucleus | 20.99 | 16.76 |
CDX92945 | Canola | nucleus | 21.44 | 16.75 |
CDY24312 | Canola | nucleus | 21.22 | 16.52 |
CDY34248 | Canola | nucleus | 21.9 | 16.41 |
AT3G22520.1 | Thale cress | nucleus | 22.12 | 16.33 |
CDX98211 | Canola | nucleus | 21.67 | 16.33 |
CDY10650 | Canola | nucleus | 21.22 | 16.15 |
CDY10289 | Canola | nucleus | 20.77 | 15.54 |
Bra039958.1-P | Field mustard | nucleus | 20.54 | 15.32 |
CDY38302 | Canola | nucleus | 21.44 | 13.79 |
VIT_17s0000g05270.t01 | Wine grape | nucleus | 11.29 | 11.57 |
VIT_05s0020g03600.t01 | Wine grape | cytosol | 10.16 | 9.11 |
GSMUA_Achr7P27170_001 | Banana | cytosol | 8.58 | 7.63 |
HORVU5Hr1G094660.1 | Barley | plastid | 7.67 | 7.52 |
Os03t0747200-01 | Rice | cytosol | 7.0 | 6.86 |
EER90880 | Sorghum | cytosol | 9.48 | 6.11 |
Zm00001d034000_P002 | Maize | cytosol | 9.03 | 5.78 |
TraesCS5B01G390300.3 | Wheat | cytosol | 8.8 | 5.59 |
TraesCS5A01G385300.3 | Wheat | cytosol | 8.58 | 5.44 |
TraesCS5D01G395300.2 | Wheat | cytosol, nucleus, plastid | 8.58 | 5.44 |
Protein Annotations
Gene3D:2.40.330.10 | MapMan:35.1 | InterPro:B3_DNA-bd | ProteinID:CBI29609 | ProteinID:CBI29609.3 | ncoils:Coil |
UniProt:D7TGI7 | InterPro:DNA-bd_pseudobarrel_sf | EMBL:FN595990 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR33345 | PANTHER:PTHR33345:SF3 |
SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0001BE36B1 | ArrayExpress:VIT_12s0035g02120 | EnsemblPlantsGene:VIT_12s0035g02120 | EnsemblPlants:VIT_12s0035g02120.t01 |
Description
No Description!
Coordinates
chr12:+:22479367..22483378
Molecular Weight (calculated)
49931.1 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.434
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPPRELPE FCNVYLPEYS SDRLLIPTAF LGHFNGVVPE KAILREFSGR VWLVEVGLIG KDVYFLNGWQ RFRTDNSLEE GVFLVFRYDG SHIFDFKLFG
101: RNQCEKIETD NDQLQAQMQE TEPFQQLVTP SSITPWVCPQ PGKEVDQEVG KKSPFTLPRR KRKAAKLPVT TIYRPRTRQS TKWFTRFNAD DTGIIDLCSL
201: SKESETSDPT NQDFRSTNDF KCDQVSSHQV PISPGGILLA DCNSPVSCGA PCTELTQGSE DNMIPEDFDN FVDSLDDMLA QPLPEALLSP SATDNYQASE
301: DEIAEARIKL SSLLAMDFHL LVSSKDLKEL ALLSSKLQKD PSLDADQLSK LKLIEEIPVT GKVFLEAMQI KEEVNKFFAD LTSSMDKATS LRNEYNASKE
401: DIAMLQVDIN SSLSTLEEID DQIAKLQSRR AELSTALKIK RRK
101: RNQCEKIETD NDQLQAQMQE TEPFQQLVTP SSITPWVCPQ PGKEVDQEVG KKSPFTLPRR KRKAAKLPVT TIYRPRTRQS TKWFTRFNAD DTGIIDLCSL
201: SKESETSDPT NQDFRSTNDF KCDQVSSHQV PISPGGILLA DCNSPVSCGA PCTELTQGSE DNMIPEDFDN FVDSLDDMLA QPLPEALLSP SATDNYQASE
301: DEIAEARIKL SSLLAMDFHL LVSSKDLKEL ALLSSKLQKD PSLDADQLSK LKLIEEIPVT GKVFLEAMQI KEEVNKFFAD LTSSMDKATS LRNEYNASKE
401: DIAMLQVDIN SSLSTLEEID DQIAKLQSRR AELSTALKIK RRK
001: MSAPIYSPID MQEIVQNPPG FDTEPVPIST YRDNEPVPLS TYRENDSDHL DATQQENDDF WENGFSREEA IEDPEPSQAK ENGKRSVDNS AFTHGETDLN
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
101: QLPAIPPVST GQGLPYAPVD WPSPGDVWTW RVGRRVTAMG YHQDRFLILP QRLQQKHVPK SFASKPQLAR YLESDFPGMD ADAFFASFSW KVPALFQPAN
201: KVDAASLFEE TPKEVQTEVG QNDENAQDGK GNSRYSQRKR KPMPTPQTYE PVEAKPKSTP RGSSNKKKKG ATTPATGPQS STKPKPSRQS GRRTSIQQRG
301: GAVDLNFLNE EESEPATAPK TSNKRKKRGV NYEEEDVSIP HIYVSPMNGV LAVSHSPIDV NPEEFDSYLN SLDNLMQQPP EEVGRDSSVL VSVSSPMREY
401: EWAEARMKIS SLLEKDFTTL FLSKDAAEIA ALATKLRKDP NLTAEEIVRL KLMEEIPTFS EVFQENKGVI EEADRFFSAL ELNKAKVASL KYEYSDLKEK
501: LGSIQMEVDT NSETIRQIDD QIAQLQARRS ELKRYIGTKE KERVDLSYGQ KMVANSIPKV VQEVQSANLK KPEWECKKDN ALKREAEILS KFTPLKGFFL
Arabidopsis Description
Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.