Factsheet for Solyc09g059910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 3
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060020.1.1	Tomato	cytosol	19.32	68.0
Solyc09g061590.1.1	Tomato	cytosol	22.35	59.6
Solyc09g060060.1.1	Tomato	cytosol	12.88	56.67
Solyc09g061500.1.1	Tomato	cytosol	25.38	53.6
Solyc09g059890.1.1	Tomato	cytosol	40.91	48.87
Solyc09g061580.1.1	Tomato	cytosol	21.21	48.28
Solyc09g061540.1.1	Tomato	cytosol	20.83	47.41
Solyc09g061370.1.1	Tomato	cytosol	33.33	45.36
Solyc09g061600.1.1	Tomato	cytosol	13.26	44.3
Solyc06g054200.1.1	Tomato	cytosol	35.61	42.53
Solyc09g059740.1.1	Tomato	cytosol	43.94	41.58
Solyc09g059870.1.1	Tomato	cytosol	20.45	41.54
Solyc09g061260.1.1	Tomato	cytosol	51.89	39.83
Solyc09g059900.1.1	Tomato	cytosol	9.85	39.39
Solyc06g054230.2.1	Tomato	cytosol	48.11	38.72
Solyc09g059860.1.1	Tomato	cytosol	11.74	38.27
Solyc09g061560.1.1	Tomato	mitochondrion	23.86	37.5
PGSC0003DMT400077583	Potato	nucleus	56.06	36.45
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	33.33	34.92
Solyc06g054180.1.1	Tomato	cytosol	32.58	34.82
Solyc09g061360.1.1	Tomato	nucleus	12.88	32.69
Solyc09g060010.1.1	Tomato	extracellular	17.8	31.13
Solyc06g054210.1.1	Tomato	nucleus	13.64	27.27
Solyc06g054190.1.1	Tomato	cytosol	13.26	26.52
Solyc09g082140.2.1	Tomato	cytosol, nucleus	32.58	25.98
Solyc06g054170.1.1	Tomato	cytosol	12.88	25.76
Solyc09g061490.1.1	Tomato	nucleus	12.12	24.24
Solyc10g018690.1.1	Tomato	cytosol	7.2	22.35
KRH27646	Soybean	cytosol, nucleus	36.74	20.34
VIT_05s0020g03600.t01	Wine grape	cytosol	37.88	20.24
KRG99083	Soybean	nucleus	37.12	20.12
Bra015422.1-P	Field mustard	cytosol	35.61	20.04
CDY47288	Canola	cytosol	35.61	19.96
KRH77849	Soybean	nucleus	35.98	19.79
CDY10107	Canola	cytosol	34.85	19.53
AT1G05410.1	Thale cress	cytosol	33.71	18.9
Solyc09g082130.2.1	Tomato	nucleus	6.44	4.11

Protein Annotations

EnsemblPlants:Solyc09g059910.1.1	EnsemblPlantsGene:Solyc09g059910.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
SEG:seg	UniParc:UPI000276B93F	UniProt:K4CTS5	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr9:-:56427081..56428207

Molecular Weight (calculated)

29914.4 Da

IEP (calculated)

8.796

GRAVY (calculated)

-0.069

Length

264 amino acids

Sequence
(BLAST)

001: MWTSKVSLYL WLHSSIGINI VRDFKLNIYQ GGGLGESYFP NAGDKWGWRA SKRVSSSSTF RDRYLYLSKH FKAPKGGQKN DFRKRTTSLG TKLLSLVSNF
101: PIRVITCKAS NEICSSLSIE NRFPTMVCDI CCSEPCFFRG CCCILCCKTI GSDYDGYKYV RCEATIDGYE CGHVSHLDIS LRAYMAGKVG EIINLDAQYL
201: CRYCDSRMDL VLHALKLINT CTFMSSRADI EKILNVGIIF CLAHKKGVEK SCCIILNQSM RRYN

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.