Factsheet for Solyc09g061260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060020.1.1	Tomato	cytosol	16.57	76.0
Solyc09g059860.1.1	Tomato	cytosol	16.57	70.37
Solyc09g059890.1.1	Tomato	cytosol	43.02	66.97
Solyc09g060060.1.1	Tomato	cytosol	11.63	66.67
Solyc09g061590.1.1	Tomato	cytosol	19.19	66.67
Solyc09g059900.1.1	Tomato	cytosol	12.79	66.67
Solyc06g054170.1.1	Tomato	cytosol	24.71	64.39
Solyc06g054190.1.1	Tomato	cytosol	24.71	64.39
Solyc09g061600.1.1	Tomato	cytosol	14.53	63.29
Solyc06g054230.2.1	Tomato	cytosol	60.17	63.11
Solyc09g059870.1.1	Tomato	cytosol	23.84	63.08
Solyc06g054210.1.1	Tomato	nucleus	23.84	62.12
Solyc09g059740.1.1	Tomato	cytosol	47.97	59.14
Solyc09g061490.1.1	Tomato	nucleus	22.38	58.33
Solyc09g061360.1.1	Tomato	nucleus	17.44	57.69
Solyc06g054200.1.1	Tomato	cytosol	36.92	57.47
Solyc09g061370.1.1	Tomato	cytosol	31.4	55.67
Solyc09g060010.1.1	Tomato	extracellular	22.97	52.32
Solyc09g059910.1.1	Tomato	extracellular	39.83	51.89
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	36.34	49.6
Solyc09g061500.1.1	Tomato	cytosol	18.02	49.6
Solyc06g054180.1.1	Tomato	cytosol	35.47	49.39
Solyc09g061560.1.1	Tomato	mitochondrion	23.84	48.81
Solyc09g061540.1.1	Tomato	cytosol	16.28	48.28
Solyc09g061580.1.1	Tomato	cytosol	16.28	48.28
Solyc10g018690.1.1	Tomato	cytosol	11.05	44.71
Solyc09g082140.2.1	Tomato	cytosol, nucleus	32.56	33.84
VIT_05s0020g03600.t01	Wine grape	cytosol	45.93	31.98
AT1G05410.1	Thale cress	cytosol	41.28	30.15
Bra015422.1-P	Field mustard	cytosol	40.7	29.85
CDY47288	Canola	cytosol	40.7	29.72
CDY10107	Canola	cytosol	40.7	29.72
KRH27646	Soybean	cytosol, nucleus	40.41	29.14
KRH77849	Soybean	nucleus	40.41	28.96
KRG99083	Soybean	nucleus	40.7	28.75
Solyc09g082130.2.1	Tomato	nucleus	10.17	8.45

Protein Annotations

EnsemblPlants:Solyc09g061260.1.1	EnsemblPlantsGene:Solyc09g061260.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
UniParc:UPI000276BB37	UniProt:K4CTV9	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr9:-:58487313..58490067

Molecular Weight (calculated)

38567.7 Da

IEP (calculated)

8.862

GRAVY (calculated)

-0.161

Length

344 amino acids

Sequence
(BLAST)

001: MFAMKEVGES RAHAIYNGSA SRINKIELQL YPVSESDFGK GLPYAPVDWP NAGDMWGWRA GKRVASSGTF RDRYLYLPKH FKAPKGGKNS FRSKISVEKY
101: LQSEYPDMDI NQFFASFSWM IPVKKSTSSK GWYRICSSLS TENPFPDMLY DMYCSEPGFC RGCCCILCFK KISSDYDGYS YIQCEAIVDG YICGHVSHLD
201: CALRSYMAGK VGGSIKLDAQ YLCRYCDSRM DLVPHALKLI KTCTSVASRA AIEKILNVGI CILRGSQKRN GKELLHHIGS IKSKLMKGVC IQDAFKKEGC
301: LDSTATSESF LMQILVRVLP AVANHFSLLR SFRSGGEILI LDHH

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.