Factsheet for VIT_00s1490g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g03600.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62180.1	VIT_05s0020g03600.t01	AT1G05410.1	21798944
AT4G21990.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018501.1-P	Field mustard	cytosol	34.45	64.29
VIT_10s0116g01650.t01	Wine grape	plastid	96.65	43.91
CDY33547	Canola	mitochondrion	35.41	43.27
KRH36471	Soybean	plastid	72.73	32.34
KRH11444	Soybean	plastid	72.25	31.99
AT4G04610.1	Thale cress	plastid	70.81	31.83
CDY16659	Canola	plastid	69.38	31.73
Bra029505.1-P	Field mustard	plastid	68.9	31.51
CDX94560	Canola	plastid	67.94	30.87
KRH51108	Soybean	plastid	68.42	30.69
AT1G62180.1	Thale cress	plastid	66.03	30.4
AT4G21990.1	Thale cress	plastid	66.03	30.13
Bra013579.1-P	Field mustard	plastid	67.46	30.13
CDX94072	Canola	plastid	66.51	29.96
CDX79117	Canola	plastid	66.51	29.57
CDX98723	Canola	plastid	66.03	29.49
VIT_12s0059g00760.t01	Wine grape	plastid	65.07	29.12
Bra019406.1-P	Field mustard	plastid	65.07	29.06
CDX82892	Canola	plastid	65.07	28.94
CDY24876	Canola	plastid	65.55	28.42
CDY07244	Canola	plastid	65.07	28.27
Bra034466.1-P	Field mustard	plastid	64.11	27.97
CDX97317	Canola	cytosol, peroxisome, plastid	4.78	5.81
Bra018502.1-P	Field mustard	cytosol, peroxisome, plastid	4.78	5.81

Protein Annotations

MapMan:25.2.1.3	Gene3D:3.40.50.620	ProteinID:CCB50212	ProteinID:CCB50212.1	UniProt:F6HDB7	EMBL:FN595607
GO:GO:0003674	GO:GO:0003824	GO:GO:0004604	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:IPR014729	InterPro:PAPS_reduct
PFAM:PF01507	PANTHER:PTHR23293	PANTHER:PTHR23293:SF13	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	UniParc:UPI000210AA1B
ArrayExpress:VIT_00s1490g00010	EnsemblPlantsGene:VIT_00s1490g00010	EnsemblPlants:VIT_00s1490g00010.t01	RefSeq:XP_003635582	RefSeq:XP_003635582.1	:

Description

No Description!

Coordinates

chrUn:+:39300967..39302999

Molecular Weight (calculated)

23031.2 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.202

Length

209 amino acids

Sequence
(BLAST)

001: MALAVTSSSA ISGPISYASS ENKAPQIGSF RPVDRSNVSL ATVTFSRRQS AVKPVNAEPK RNDSIVPLAA TVSAPEVAEK VEVEDYEQLA RDLANASPLE
101: IMDKALAKFG NDIAIAFSGA EDIALIEYAR LTGRPFRVFS LDTGRLNPET YQFFDTVEKH YGIRIEYMFP DAVEVQGLVR SKGLFSFYED GHQECCRVRS
201: ETLERALKV

Best Arabidopsis Sequence Match ( AT4G04610.1 )
(BLAST)

001: MAMSVNVSSS SSSGIINSRF GVSLEPKVSQ IGSLRLLDRV HVAPVSLNLS GKRSSSVKPL NAEPKTKDSM IPLAATMVAE IAEEVEVVEI EDFEELAKKL
101: ENASPLEIMD KALEKYGNDI AIAFSGAEDV ALIEYAHLTG RPFRVFSLDT GRLNPETYRF FDAVEKHYGI RIEYMFPDSV EVQGLVRSKG LFSFYEDGHQ
201: ECCRVRKVRP LRRALKGLKA WITGQRKDQS PGTRSEIPVV QVDPVFEGLD GGVGSLVKWN PVANVEGNDV WNFLRTMDVP VNTLHAAGYI SIGCEPCTKA
301: VLPGQHEREG RWWWEDAKAK ECGLHKGNVK ENSDDAKVNG ESKSAVADIF KSENLVTLSR QGIENLMKLE NRKEPWIVVL YAPWCPFCQA MEASYDELAD
401: KLAGSGIKVA KFRADGDQKE FAKQELQLGS FPTILVFPKN SSRPIKYPSE KRDVESLTSF LNLVR

Arabidopsis Description

APR15'-adenylylsulfate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P92979]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.