Factsheet for VIT_10s0116g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g03600.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62180.1	VIT_05s0020g03600.t01	AT1G05410.1	21798944
AT4G21990.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1490g00010.t01	Wine grape	plastid	43.91	96.65
Bra018501.1-P	Field mustard	cytosol	19.13	78.57
KRH36471	Soybean	plastid	80.0	78.3
KRH11444	Soybean	plastid	79.57	77.54
KRH51108	Soybean	plastid	78.26	77.25
VIT_12s0059g00760.t01	Wine grape	plastid	76.09	74.95
AT4G04610.1	Thale cress	plastid	75.22	74.41
CDY16659	Canola	plastid	73.7	74.18
AT4G21990.1	Thale cress	plastid	73.48	73.8
Bra029505.1-P	Field mustard	plastid	73.26	73.74
AT1G62180.1	Thale cress	plastid	72.39	73.35
Bra013579.1-P	Field mustard	plastid	74.57	73.29
CDX94072	Canola	plastid	73.26	72.63
CDX94560	Canola	plastid	72.61	72.61
CDX79117	Canola	plastid	74.13	72.55
CDX98723	Canola	plastid	72.83	71.58
CDX82892	Canola	plastid	73.04	71.49
Bra019406.1-P	Field mustard	plastid	72.17	70.94
CDY07244	Canola	plastid	72.39	69.23
CDY24876	Canola	plastid	72.39	69.09
Bra034466.1-P	Field mustard	plastid	71.74	68.89
CDY33547	Canola	mitochondrion	25.22	67.84
Bra018502.1-P	Field mustard	cytosol, peroxisome, plastid	21.52	57.56
CDX97317	Canola	cytosol, peroxisome, plastid	21.52	57.56

Protein Annotations

KEGG:00920+1.8.4.9	EntrezGene:100853787	wikigene:100853787	EntrezGene:100854884	wikigene:100854884	MapMan:25.2.1.3
Gene3D:3.40.30.10	Gene3D:3.40.50.620	ProteinID:CCB48209	ProteinID:CCB48209.1	UniProt:F6H7K9	EMBL:FN595248
GO:GO:0003674	GO:GO:0003824	GO:GO:0004604	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019419
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR014729	EntrezGene:LOC100853787
wikigene:LOC100853787	EntrezGene:LOC100854884	wikigene:LOC100854884	InterPro:PAPS_reduct	PFAM:PF00085	PFAM:PF01507
PFscan:PS51352	PANTHER:PTHR23293	PANTHER:PTHR23293:SF13	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	SUPFAM:SSF52833
TIGR:TC54874	TIGR:TC64081	TIGRFAMs:TIGR00424	InterPro:Thioredoxin-indep_APS_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0002108D23	ArrayExpress:VIT_10s0116g01650	EnsemblPlantsGene:VIT_10s0116g01650	EnsemblPlants:VIT_10s0116g01650.t01	unigene:Vvi.24758	unigene:Vvi.7085
RefSeq:XP_003632943	RefSeq:XP_003632943.1	RefSeq:XP_003632944	RefSeq:XP_003632944.1	:	:

Description

No Description!

Coordinates

chr10:-:885317..888353

Molecular Weight (calculated)

50950.6 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.358

Length

460 amino acids

Sequence
(BLAST)

001: MALAVTSSSA ISGPISYASS ENKAPQIGSF RPVDRSNVSL ATVTFSRRQS AVKPVNAEPK RNDSIVPLAA TVSAPEVAEK VEVEDYEQLA RDLANASPLE
101: IMDKALAKFG NDIAIAFSGA EDIALIEYAR LTGRPFRVFS LDTGRLNPET YQFFDTVEKH YGIRIEYMFP DAVEVQGLVR SKGLFSFYED GHQECCRVRK
201: VRPLRRALKG LRAWITGQRK DQSPGTRAEV PVVQVDPAFE GLDGGVGSLV KWNPVANVQG MDIWNFLRAM NVPVNSLHSK GYISIGCEPC TRPVLPGQHE
301: REGRWWWEDA KAKECGLHKG NLKQEDGNKN GNGHANGTAT VSDLFDTQSL VTLTRTGMEN LAKLENRKEP WLVVLYAPWC PFCQAMEGSY VELAEKLAGS
401: GVKVGKFRAD GDEKEFAQRE LQLGSFPTIL FFPKHSSQPI KYTSEKRDVD SLMAFVNALR

Best Arabidopsis Sequence Match ( AT4G21990.1 )
(BLAST)

001: MALAINVSSS SSSAISSSSF PSSDLKVTKI GSLRLLNRTN VSAASLSLSG KRSSVKALNV QSITKESIVA SEVTEKLDVV EVEDFEELAK RLENASPLEI
101: MDKALEKFGN DIAIAFSGAE DVALIEYAHL TGRPYRVFSL DTGRLNPETY RLFDTVEKHY GIRIEYMFPD AVEVQALVRN KGLFSFYEDG HQECCRIRKV
201: RPLRRALKGL RAWITGQRKD QSPGTRSEIP VVQVDPVFEG LDGGVGSLVK WNPVANVEGN DVWNFLRTMD VPVNTLHAAG YVSIGCEPCT RAVLPGQHER
301: EGRWWWEDAK AKECGLHKGN IKENTNGNAT ANVNGTASVA DIFNSENVVN LSRQGIENLM KLENRKEAWI VVLYAPWCPF CQAMEASFDE LADKLGGSGV
401: KVAKFRADGD QKDFAKKELQ LGSFPTILVF PKNSSRPIKY PSEKRDVDSL TSFLNLVR

Arabidopsis Description

APR35'-adenylylsulfate reductase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P92980]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.