Factsheet for VIT_02s0087g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_03s0038g04360.t01
VIT_07s0031g00610.t01
VIT_09s0002g06040.t01
VIT_09s0054g00440.t01
VIT_12s0057g00710.t01
VIT_13s0106g00770.t01
VIT_14s0066g02380.t01
VIT_19s0015g00810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07840.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT5G07840.1	VIT_13s0106g00770.t01	AT3G01340.1	21798944
AT5G07840.1	VIT_14s0066g02380.t01	AT3G01340.1	21798944
AT5G07840.1	VIT_19s0015g00810.t01	AT3G01340.1	21798944
AT5G61230.1	VIT_09s0054g00440.t01	AT1G51600.1	21798944
AT5G61230.1	VIT_12s0057g00710.t01	AT2G05230.1	21798944
AT5G61230.1	VIT_12s0057g00710.t01	AT2G05250.1	21798944
AT5G61230.1	VIT_09s0002g06040.t01	AT3G15660.1	21798944
AT5G61230.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT5G61230.1	VIT_07s0031g00610.t01	AT4G36970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0102600-01	Rice	cytosol, mitochondrion	71.26	74.7
Zm00001d014925_P001	Maize	mitochondrion	70.11	73.49
KRH76405	Soybean	cytosol	72.41	73.26
EES06098	Sorghum	cytosol, mitochondrion	68.97	72.73
GSMUA_Achr9P23190_001	Banana	cytosol	71.84	72.67
KRH39707	Soybean	cytosol	71.84	72.67
HORVU6Hr1G001980.1	Barley	mitochondrion	68.97	71.86
PGSC0003DMT400011414	Potato	cytosol	68.97	71.01
Solyc08g005910.2.1	Tomato	cytosol	68.97	71.01
TraesCS6D01G006600.1	Wheat	cytosol	68.39	70.83
TraesCS6B01G009600.1	Wheat	mitochondrion	68.39	70.41
TraesCS6A01G004600.1	Wheat	mitochondrion	68.39	70.41
PGSC0003DMT400075540	Potato	cytosol, mitochondrion	61.49	70.39
TraesCS2B01G597300.1	Wheat	cytosol	67.24	69.64
Solyc12g096260.1.1	Tomato	cytosol	48.85	66.41
CDY02163	Canola	cytosol, mitochondrion	62.07	61.71
Bra012976.1-P	Field mustard	cytosol, mitochondrion	62.07	61.71
AT5G61230.1	Thale cress	cytosol, plastid	60.92	60.92
CDY23077	Canola	cytosol	61.49	60.8
AT5G07840.1	Thale cress	cytosol	58.62	58.29
CDX87205	Canola	cytosol, mitochondrion	62.07	58.06
CDY16818	Canola	cytosol, mitochondrion	62.07	57.14

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100266568	wikigene:100266568	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI29240	ProteinID:CBI29240.3	UniProt:D7TFG7	EMBL:FN595769	GO:GO:0000151
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100266568	wikigene:LOC100266568	PFAM:PF13606
PFAM:PF13637	PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45189	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI00015CD44E	ArrayExpress:VIT_02s0087g00100	EnsemblPlantsGene:VIT_02s0087g00100	EnsemblPlants:VIT_02s0087g00100.t01	unigene:Vvi.12920
RefSeq:XP_002268442	RefSeq:XP_002268442.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:17221757..17235937

Molecular Weight (calculated)

19347.8 Da

IEP (calculated)

8.090

GRAVY (calculated)

-0.661

Length

174 amino acids

Sequence
(BLAST)

001: MFETKPDSFR RNLSKKRSFR AAVGGDDRGW TLLHVGARKG DLNEVRRLLD EGMDVNVAAC GPKSKGVTPL HLAAQGGHLR VMDELLERGA NIDARTKGAC
101: GWTPLHNAAK ERNKDAIKFL IENGAFLAAD INDNRFNPPL HYCTGLEWAY EEMKRIQQEN WSSSAGETSY SSES

Best Arabidopsis Sequence Match ( AT5G61230.1 )
(BLAST)

001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN

Arabidopsis Description

PIA2Phytochrome-interacting ankyrin-repeat protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.